EY726548

Overview
NameEY726548
Unique NameEY726548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY726548 vs. ExPASy Swiss-Prot
Match: RH48_ARATH (Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana GN=RH48 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.105e-17
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  149 MGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFS-VSADEQVKVLADRFQRPGGFDLWTESDGP 445
            MGGGPRT+PGG++KWQWKRM  KK ++     L +E+ +YE R R E++A +       E   K+      +S  E +K LADRF + G  D W E+DGP
Sbjct:   26 MGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAKMWGNPDSGEKTAKSKQSHGPMSPKEHIKTLADRFMKAGAEDFWNENDGP 125          
BLAST of EY726548 vs. ExPASy Swiss-Prot
Match: RH33_ARATH (Putative DEAD-box ATP-dependent RNA helicase 33 OS=Arabidopsis thaliana GN=RH33 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.443e-17
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  149 MGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFS-VSADEQVKVLADRFQRPGGFDLWTESDGP 445
            MGGGPRT+PGG++KWQWKRM  KK ++     L +E+ +YE R R E++A +       E   K       +S  E +K LADRF + G  DLW ++DGP
Sbjct:   76 MGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAKMWGHPDSGEKTAKLKQSHGPMSPKEHIKTLADRFMKAGADDLWNDNDGP 175          
BLAST of EY726548 vs. ExPASy Swiss-Prot
Match: RH48_ORYSJ (DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica GN=Os02g0826100 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.156e-13
Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = 2
Query:  149 MGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFS--VSADEQVKVLADRFQRPGGFDLWTESDGP 445
            MGGGPRT+PGG+SKWQ KRM  K  +   +  L  E+ +Y  R R+E++A+     R   A    P+      S+   ++ LADRF  PG  DLW E DGP
Sbjct:    1 MGGGPRTFPGGLSKWQHKRMHEKLARHKERGLLRHEKQLYLARLRSEIRAS-----RLPAAGASPPDDGDGPTSSRAHIRALADRFLLPGAEDLWNEDDGP 96          
The following BLAST results are available for this feature:
BLAST of EY726548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RH48_ARATH1.105e-1744.00Probable DEAD-box ATP-dependent RNA helicase 48 OS... [more]
RH33_ARATH1.443e-1744.00Putative DEAD-box ATP-dependent RNA helicase 33 OS... [more]
RH48_ORYSJ2.156e-1342.57DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sa... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-092-A12-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY726548 ID=EY726548; Name=EY726548; organism=Citrus sinensis; type=EST; length=921bp
AATGGCTCTCTCAATAACCGCTTCTTCAGCTTCTGTGCTATCTTTCTCAC
AATCACTATCCTCACCGACCCAACTCTTCCTCGCCAACAGACCCACCTAC
GTTTCTTTCAACAACAATCACGACCACCCAAAATCAACAGTAATCCGAAT
GGGAGGTGGGCCCCGCACGTATCCAGGCGGGGTCTCAAAGTGGCAGTGGA
AGCGTATGCAAGCCAAGAAAGGCAAGCAGCTCCTCAAAGCCCGCCTCTGC
CGCGAGAGACATATCTACGAGATGCGAAAGAGAGCCGAACTCAAAGCCGC
AGTTTCCGAGCTCGAGCGCCCCTGGGAGGCCGTCGAAAAAGCCCCCAACC
TCTTCTCTGTCAGCGCCGACGAGCAAGTCAAAGTCTTGGCGGACCGGTTT
CAAAGACCCGGCGGGTTTGACCTCTGGACCGAGAGCGACGGCCCGCAAAT
GTTTGAGACCCCCGACGGGTTGCCTTCCGCTAGGTTTTTCCCCAAAGGAG
TCGTTCACAGCGTGAAACCCTATGGGCTTATTGCGTCGAAGCGCAATGAC
TTACAGAGAAAAGAAGATAACGAAAAGGGAAATGGGAATTGGCAGGAGGT
TTCGAGCACAATGGGGTTCAACCAAAAGCCGTCGAAAAAAAGGTGGAAGA
AGGCGGAATACCATGGCAAATCACAATTTAATTGGATGACAATTATTTTT
AGGACATGCTTTTTTCCTTCTTAGAATTACAAAGATAAATAAAATTTAAA
AATACCCTCTCATCAAAACACGACACAAAAAAAACCACCCAAAACCACAA
AACCCTCGACGCTATCTCACCTAACACGACATACATCCCCACCCCCAGAC
AGCTAAGCTAACCCGGCGACGAACCAACACAGTCCCCGCAACACAACCCA
AACAAAGTCAAATACTCCCAC
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