EY726539

Overview
NameEY726539
Unique NameEY726539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY726539 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.165e-59
Identity = 110/126 (87.30%), Postives = 118/126 (93.65%), Query Frame = 1
Query:  151 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLASVPELLHSCG--GSPTPT 522
            MSCNGCRVLRKGCSE+CILRPC+QWIESPE+QGHATVFVAKFFGRAGLMSFISAVPESQ PALFQSLLYEACGRTVNPVNGAVGLLWTGNW+VCQAAVETVLRGG+L  +PELL+  G  G P+PT
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFAGFPSPT 126          
BLAST of EY726539 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.425e-57
Identity = 104/127 (81.89%), Postives = 117/127 (92.13%), Query Frame = 1
Query:  151 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLASVPELLHSCG---GSPTPT 522
            MSCNGCRVLRKGCSE+CILRPC+QWIE+ ++QGHATVFVAKFFGRAGLMSFISAVP+SQRPALFQSLLYEACGRTVNPVNGA+G+LWTGNW++CQAAVETVLRGG+L  +PELL   G   G P+PT
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGFAGFPSPT 127          
BLAST of EY726539 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.687e-56
Identity = 103/116 (88.79%), Postives = 109/116 (93.97%), Query Frame = 1
Query:  151 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLASVPELLHS 498
            MSCNGCRVLRKGCSE+CILRPCLQWIES ESQGHATVFVAKFFGRAGLMSFIS+VPE QRPALFQSLL+EACGRTVNPVNGAVG+LWT NWHVCQAAVETVLRGGTL  + +LL S
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLES 116          
BLAST of EY726539 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.407e-43
Identity = 76/110 (69.09%), Postives = 95/110 (86.36%), Query Frame = 1
Query:  151 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLASV 480
            MSCNGCRVLRKGCSE+C +RPCLQWI+S ESQ +ATVF+AKF+GRAGLM+ ++  P+  RPA+F+SLLYEACGR VNP+ G+VGLLW+GNWH+CQAAVE V+RG  +  +
Sbjct:    3 MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPI 112          
BLAST of EY726539 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.067e-40
Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = 1
Query:  151 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLASVPELLHSCGGSP 513
            MSCNGCRVLRKGCSE C +RPCL WI+SPE+Q +ATVF+AKF+GRAGLM+ I+A P   RP +F+SLL+EACGR VNP+ G+VGLLW+GNW +CQ AVE V++G  +  +     + G  P
Sbjct:    3 MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIGQGP 123          
BLAST of EY726539 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.285e-39
Identity = 70/111 (63.06%), Postives = 92/111 (82.88%), Query Frame = 1
Query:  151 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLASVP 483
            +SCNGCRVLRKGC++ C +RPCLQWI+S +SQ +AT+F+AKF+GRAGL++ I + P+  RPA+F+SLLYEACGR VNPV+G+VGL+W+GNW  CQAAV+ VL G  +   P
Sbjct:    3 ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTP 113          
The following BLAST results are available for this feature:
BLAST of EY726539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD38_ARATH1.165e-5987.30LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD37_ARATH1.425e-5781.89LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD39_ARATH2.687e-5688.79LOB domain-containing protein 39 OS=Arabidopsis th... [more]
LBD40_ARATH3.407e-4369.09LOB domain-containing protein 40 OS=Arabidopsis th... [more]
LBD41_ARATH2.067e-4061.16LOB domain-containing protein 41 OS=Arabidopsis th... [more]
LBD42_ARATH2.285e-3963.06LOB domain-containing protein 42 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-092-A02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY726539 ID=EY726539; Name=EY726539; organism=Citrus sinensis; type=EST; length=914bp
CACGCGTCCGCTTTCTGCAGCAGCCAGCCCCTTGAATCAACAACCTTAAT
AATTACTCTCCAAATCCTCGCGTTTATGTAATAGCTTTTCTTTTTTTAAC
CCTTTCTCTTTAAGGATAAAGAAGAACGACAAAAGACAAGAAGCTGAGAG
ATGAGTTGCAACGGATGCCGAGTTTTGCGAAAAGGATGCAGCGAGTCGTG
TATTTTACGTCCTTGTTTACAGTGGATCGAGAGTCCTGAATCCCAAGGCC
ACGCTACTGTGTTCGTCGCCAAATTCTTTGGCCGTGCTGGCCTCATGTCC
TTCATCTCGGCTGTCCCTGAATCCCAGCGTCCTGCGTTGTTTCAGTCTTT
GTTGTACGAAGCCTGTGGCCGAACTGTGAATCCTGTGAATGGAGCTGTAG
GTCTTTTGTGGACGGGGAACTGGCATGTTTGCCAGGCTGCCGTGGAAACT
GTCCTCCGAGGCGGCACGTTGGCGTCGGTGCCGGAGCTTCTCCACAGCTG
CGGCGGATCGCCAACACCAACTTTCCGACGATGTATCGGAAACTGAAGTG
ACTTGCCCGGGACATGTCTAGGGTGCCAGAACGGTCGCTTCCAAGGTTCT
TCATTGGAAATTCACCAGTTTCAAAAATCAAGGCGGCCGCCTCGTGCCGC
CGGAGCTTGGAGTAACTCTTCCTTAGGGTGGCACCCGCTCAACACGCATC
ACTGCCTGATGCCAAGGGGTACCGCGGCGGCGTCCAGCAGGAGGGGGAGA
ATCCGCACGGACAGGGAACTCCTGACCCCCCTGCCGCCCACTCGGCCCCC
TCTCTCATTGGTCTACTGTACCACGATCTGCACTTCCTCCGTCGATACTA
CACAGGATGCGCCACGGCCCCGCTCTCGCCCAGCCGCTCAGCACCCCCCG
CACCCGAACGCAGC
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