EY726534

Overview
NameEY726534
Unique NameEY726534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY726534 vs. ExPASy Swiss-Prot
Match: RDGC_PSEFS (Recombination-associated protein rdgC OS=Pseudomonas fluorescens (strain SBW25) GN=rdgC PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 6.631e-49
Identity = 102/126 (80.95%), Postives = 102/126 (80.95%), Query Frame = -2 
Query:   26 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQTFLPRAFIRRSST 403
            MWFKNLLIYRLTQDLPVD            ARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRD           EQMRKVYKKERDQIKDEIIQ FLPRAFIRRSST
Sbjct:    1 MWFKNLLIYRLTQDLPVDAEALEAAMATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDALKEKVEEIEAEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 126
[Close]
BLAST of EY726534 vs. ExPASy Swiss-Prot
Match: RDGC_PSEPF (Recombination-associated protein rdgC OS=Pseudomonas fluorescens (strain Pf0-1) GN=rdgC PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.477e-48
Identity = 101/126 (80.16%), Postives = 102/126 (80.95%), Query Frame = -2 
Query:   26 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQTFLPRAFIRRSST 403
            MWFKNLLIYRLTQDLPVD            ARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLI+ARKEERILPGSVVRD           EQMRKVYKKERDQIKDEIIQ FLPRAFIRRSST
Sbjct:    1 MWFKNLLIYRLTQDLPVDAEALETALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLISARKEERILPGSVVRDAVKEKVEEIEAEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 126
[Close]
BLAST of EY726534 vs. ExPASy Swiss-Prot
Match: RDGC_PSEF5 (Recombination-associated protein rdgC OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rdgC PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.752e-47
Identity = 98/126 (77.78%), Postives = 100/126 (79.37%), Query Frame = -2 
Query:   26 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQTFLPRAFIRRSST 403
            MWFKNLLIYRLTQDLP D            ARPCASQELTTYGFVAPFGKGEDAPLVHVS DF+L+AARKEERILPGSVVRD           EQMRKVYKKERDQIKDEIIQ FLPRAFIRRSST
Sbjct:    1 MWFKNLLIYRLTQDLPFDAEALETALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSQDFMLVAARKEERILPGSVVRDAVKEKVEEIEAEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 126
[Close]
BLAST of EY726534 vs. ExPASy Swiss-Prot
Match: RDGC_PSESM (Recombination-associated protein rdgC OS=Pseudomonas syringae pv. tomato GN=rdgC PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.690e-44
Identity = 93/126 (73.81%), Postives = 98/126 (77.78%), Query Frame = -2 
Query:   26 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQTFLPRAFIRRSST 403
            MWFKNLLIYRLTQD+P D            AR CASQE+ TYGFVAPFGKGEDAPLVH+S DFLLIAARKEERILPGSVVRD           EQMRKVYKKERDQ+KDEIIQ FLPRAFIRRS+T
Sbjct:    1 MWFKNLLIYRLTQDVPFDAEALETALATKPARACASQEVATYGFVAPFGKGEDAPLVHISQDFLLIAARKEERILPGSVVRDALKEKVDEIEAEQMRKVYKKERDQLKDEIIQAFLPRAFIRRSAT 126
[Close]
BLAST of EY726534 vs. ExPASy Swiss-Prot
Match: RDGC_PSE14 (Recombination-associated protein rdgC OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rdgC PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.207e-44
Identity = 92/126 (73.02%), Postives = 98/126 (77.78%), Query Frame = -2 
Query:   26 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQTFLPRAFIRRSST 403
            MWFKNLL+YRLTQD+P D            AR CASQE+ TYGFVAPFGKGEDAPLVH+S DFLLIAARKEERILPGSVVRD           EQMRKVYKKERDQ+KDEIIQ FLPRAFIRRS+T
Sbjct:    1 MWFKNLLVYRLTQDVPFDAEALETALATKPARACASQEVATYGFVAPFGKGEDAPLVHISQDFLLIAARKEERILPGSVVRDALKEKVDEIEAEQMRKVYKKERDQLKDEIIQAFLPRAFIRRSAT 126
[Close]
BLAST of EY726534 vs. ExPASy Swiss-Prot
Match: RDGC_PSEU2 (Recombination-associated protein rdgC OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rdgC PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.765e-44
Identity = 91/126 (72.22%), Postives = 98/126 (77.78%), Query Frame = -2 
Query:   26 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQTFLPRAFIRRSST 403
            MWFKNLL+YRLTQD+P D            AR CASQE+ TYGFVAPFGKGEDAPLVH+S DF+LIAARKEERILPGSVVRD           EQMRKVYKKERDQ+KDEIIQ FLPRAFIRRS+T
Sbjct:    1 MWFKNLLVYRLTQDVPFDAEALETALATKPARACASQEVATYGFVAPFGKGEDAPLVHISQDFMLIAARKEERILPGSVVRDALKEKVDEIEAEQMRKVYKKERDQLKDEIIQAFLPRAFIRRSAT 126
[Close]
BLAST of EY726534 vs. ExPASy Swiss-Prot
Match: RDGC_PSEAE (Recombination-associated protein rdgC OS=Pseudomonas aeruginosa GN=rdgC PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.388e-44
Identity = 90/126 (71.43%), Postives = 97/126 (76.98%), Query Frame = -2 
Query:   26 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQTFLPRAFIRRSST 403
            MWF+NLL+YRLTQDL +D            ARPCASQELTTYGF APFGKG DAPLVHVS DF LI+ARKEERILPGSVVRD           +QMRKVYKKERDQ+KDEI+QT LPRAFIRRSST
Sbjct:    1 MWFRNLLVYRLTQDLQLDADSLEKALGEKSARPCASQELTTYGFTAPFGKGPDAPLVHVSQDFFLISARKEERILPGSVVRDALKEKVDEIEAQQMRKVYKKERDQLKDEIVQTLLPRAFIRRSST 126
[Close]
BLAST of EY726534 vs. ExPASy Swiss-Prot
Match: RDGC_PSEAB (Recombination-associated protein rdgC OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rdgC PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.388e-44
Identity = 90/126 (71.43%), Postives = 97/126 (76.98%), Query Frame = -2 
Query:   26 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQTFLPRAFIRRSST 403
            MWF+NLL+YRLTQDL +D            ARPCASQELTTYGF APFGKG DAPLVHVS DF LI+ARKEERILPGSVVRD           +QMRKVYKKERDQ+KDEI+QT LPRAFIRRSST
Sbjct:    1 MWFRNLLVYRLTQDLQLDADSLEKALGEKPARPCASQELTTYGFTAPFGKGPDAPLVHVSQDFFLISARKEERILPGSVVRDALKEKVDEIEAQQMRKVYKKERDQLKDEIVQTLLPRAFIRRSST 126
[Close]
BLAST of EY726534 vs. ExPASy Swiss-Prot
Match: RDGC_PSEA8 (Recombination-associated protein rdgC OS=Pseudomonas aeruginosa (strain LESB58) GN=rdgC PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.388e-44
Identity = 90/126 (71.43%), Postives = 97/126 (76.98%), Query Frame = -2 
Query:   26 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQTFLPRAFIRRSST 403
            MWF+NLL+YRLTQDL +D            ARPCASQELTTYGF APFGKG DAPLVHVS DF LI+ARKEERILPGSVVRD           +QMRKVYKKERDQ+KDEI+QT LPRAFIRRSST
Sbjct:    1 MWFRNLLVYRLTQDLQLDADSLEKALGEKPARPCASQELTTYGFTAPFGKGPDAPLVHVSQDFFLISARKEERILPGSVVRDALKEKVDEIEAQQMRKVYKKERDQLKDEIVQTLLPRAFIRRSST 126
[Close]
BLAST of EY726534 vs. ExPASy Swiss-Prot
Match: RDGC_PSEA7 (Recombination-associated protein rdgC OS=Pseudomonas aeruginosa (strain PA7) GN=rdgC PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.096e-43
Identity = 89/126 (70.63%), Postives = 97/126 (76.98%), Query Frame = -2 
Query:   26 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQTFLPRAFIRRSST 403
            MWF+NLL+YRLTQDL +D            ARPCASQELTTYGF APFGKG DAPLVHVS DF L++ARKEERILPGSVVRD           +QMRKVYKKERDQ+KDEI+QT LPRAFIRRSST
Sbjct:    1 MWFRNLLVYRLTQDLQLDADALEKALGEKPARPCASQELTTYGFTAPFGKGPDAPLVHVSQDFFLVSARKEERILPGSVVRDALKEKVDEIEAQQMRKVYKKERDQLKDEIVQTLLPRAFIRRSST 126
The following BLAST results are available for this feature:
BLAST of EY726534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
RDGC_PSEFS6.631e-4980.95Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEPF1.477e-4880.16Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEF54.752e-4777.78Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSESM1.690e-4473.81Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSE142.207e-4473.02Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEU23.765e-4472.22Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEAE8.388e-4471.43Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEAB8.388e-4471.43Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEA88.388e-4471.43Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEA71.096e-4370.63Recombination-associated protein rdgC OS=Pseudomon... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-091-H08-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY726534 ID=EY726534; Name=EY726534; organism=Citrus sinensis; type=EST; length=563bp
ACACTGCAGTACGGTCGGAATTCCGGGTCGACGAGCGACGGATGAACGCG
CGCGGCAGGAAGGTCTGGATGATTTCATCCTTGATCTGGTCGCGTTCCTT
TTTGTAGACCTTGCGCATTTGCTCGGCTTCGATCTCTTCGACCTTTTCCT
TCACCGCGTCACGCACTACGCTGCCCGGCAGGATACGTTCTTCCTTGCGC
GCAGCGATCAGCAGGAAATCACCGCTGACGTGCACCAGGGGCGCGTCTTC
GCCTTTACCGAAAGGGGCGACGAAACCGTAAGTGGTCAACTCCTGGCTTG
CACAAGGGCGCGCCAGTTTGGTGGCCAGTGCAGTTTCCAACGCCTCGGCA
TCAACAGGCAGATCTTGGGTCAGGCGATAGATAAGCAGGTTTTTGAACCA
CATGGGGTGAGTCTCTCCTTATATACAAAGGGGGGCATTATTCTCCTCAT
GGCGTCATAGGCCAACCCTCGCTAAGCCATTGGAAGGCCTGAAAAAAATT
ATTTAAGAAAGTGCTTGCCAGACCATGGGTCGCTCCGTAGAATGCGCGCC
ACACCGAAAGTGA
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