GE213173

Overview
NameGE213173
Unique NameGE213173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length369
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213173 vs. ExPASy Swiss-Prot
Match: GMPAA_DANRE (Mannose-1-phosphate guanyltransferase alpha-A OS=Danio rerio GN=gmppaa PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.220e-23
Identity = 58/126 (46.03%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   25 YIHPSAKIHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN------GDYNAKL-------------GITILGEAVTVEDEVVVINSIVLPNKVLNVS 345
            YIHP+A I PTA +GPNVSI   V +GAGVR+   I+L    +++++ VLNSI+GW+S++G+WARV+G        D  AK+              ITILG  V +  EV+++NSIVLP+K LN S
Sbjct:  290 YIHPTANIDPTAVLGPNVSIGTGVTIGAGVRVRESIILHGATLQDHSCVLNSIVGWESTIGKWARVEGTPSDPNPNDPYAKIDSETLFRDGKLTPSITILGCNVNIPSEVIILNSIVLPHKDLNRS 415          
BLAST of GE213173 vs. ExPASy Swiss-Prot
Match: GMPPA_XENTR (Mannose-1-phosphate guanyltransferase alpha OS=Xenopus tropicalis GN=gmppa PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.143e-22
Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   25 YIHPSAKIHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQG-------NGDYN----------AKL--GITILGEAVTVEDEVVVINSIVLPNKVLNVS 345
            YIHP+A + P+A +GPNVSI   V VGAGVR+   IVL    +++++ VLN+I+GW S++GRWARV+G       N  Y+           KL   ITILG  V++  EVV++NSIVLP+K L+ S
Sbjct:  289 YIHPTANVDPSAVLGPNVSIGMGVTVGAGVRIRESIVLHGAVLQDHSCVLNTIVGWDSTVGRWARVEGTPSDPNPNDPYSKIDSETLFREGKLTPSITILGCNVSIPAEVVILNSIVLPHKELSRS 414          
BLAST of GE213173 vs. ExPASy Swiss-Prot
Match: MPG1_CRYNE (Mannose-1-phosphate guanyltransferase OS=Cryptococcus neoformans GN=MPG1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.329e-22
Identity = 46/111 (41.44%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   28 IHPSAKIHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVPRPR 360
            + PSA+I PTA IGPNV I  + ++G GVRL  C+++ +  +++++ + NSI+GW S++GRW RV+          IT+LG+ VT++DE+ V  + VLP+K ++ S+  PR
Sbjct:  260 VDPSAEIDPTAVIGPNVVIGPDAKIGPGVRLQRCVIMSNATVRDHSWIANSIVGWNSTVGRWTRVE---------NITVLGDDVTIKDELYVNGASVLPHKSISTSITEPR 361          
BLAST of GE213173 vs. ExPASy Swiss-Prot
Match: GMPPA_PAPAN (Mannose-1-phosphate guanyltransferase alpha OS=Papio anubis GN=GMPPA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.218e-21
Identity = 58/126 (46.03%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   25 YIHPSAKIHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN------GDYNAKL-------------GITILGEAVTVEDEVVVINSIVLPNKVLNVS 345
            YIHP+AK+ P+A +GPNVSI   V VG GVRL   IVL    ++E+  VL+SI+GW S++GRWARV+G        D  A++              ITILG  V +  EV+++NSIVLP+K L+ S
Sbjct:  288 YIHPTAKVAPSAVLGPNVSIGKGVTVGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVEGTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRS 413          
BLAST of GE213173 vs. ExPASy Swiss-Prot
Match: GMPPA_HUMAN (Mannose-1-phosphate guanyltransferase alpha OS=Homo sapiens GN=GMPPA PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.218e-21
Identity = 58/126 (46.03%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   25 YIHPSAKIHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN------GDYNAKL-------------GITILGEAVTVEDEVVVINSIVLPNKVLNVS 345
            YIHP+AK+ P+A +GPNVSI   V VG GVRL   IVL    ++E+  VL+SI+GW S++GRWARV+G        D  A++              ITILG  V +  EV+++NSIVLP+K L+ S
Sbjct:  288 YIHPTAKVAPSAVLGPNVSIGKGVTVGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVEGTPSDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRS 413          
BLAST of GE213173 vs. ExPASy Swiss-Prot
Match: GMPPA_RAT (Mannose-1-phosphate guanyltransferase alpha OS=Rattus norvegicus GN=Gmppa PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.591e-21
Identity = 57/126 (45.24%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   25 YIHPSAKIHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN------GDYNAKL-------------GITILGEAVTVEDEVVVINSIVLPNKVLNVS 345
            YIHP+AK+ P+A +GPNVSI   V +G GVRL   IVL    ++E+  VL+SI+GW S++GRWARV+G        D  A++              ITILG  V +  EV+++NSIVLP+K L+ S
Sbjct:  288 YIHPTAKVAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVEGTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRS 413          
BLAST of GE213173 vs. ExPASy Swiss-Prot
Match: GMPPA_MOUSE (Mannose-1-phosphate guanyltransferase alpha OS=Mus musculus GN=Gmppa PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.591e-21
Identity = 57/126 (45.24%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   25 YIHPSAKIHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN------GDYNAKL-------------GITILGEAVTVEDEVVVINSIVLPNKVLNVS 345
            YIHP+AK+ P+A +GPNVSI   V +G GVRL   IVL    ++E+  VL+SI+GW S++GRWARV+G        D  A++              ITILG  V +  EV+++NSIVLP+K L+ S
Sbjct:  288 YIHPTAKVAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVEGTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRS 413          
BLAST of GE213173 vs. ExPASy Swiss-Prot
Match: GMPAB_XENLA (Mannose-1-phosphate guanyltransferase alpha-B OS=Xenopus laevis GN=gmppa-B PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.078e-21
Identity = 57/126 (45.24%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   25 YIHPSAKIHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQG-------NGDYN----------AKL--GITILGEAVTVEDEVVVINSIVLPNKVLNVS 345
            YIHP+A + P+A +GPNVS+   V VGAGVR+   I+L    +++++ VLN+I+GW S +GRWARV+G       N  Y+           KL   ITILG  V++  EVV++NSIVLP+K L+ S
Sbjct:  294 YIHPTANVDPSAVLGPNVSVGMGVTVGAGVRIRESIILHGAVLQDHSCVLNTIVGWDSMVGRWARVEGTPSDPNPNDPYSKIDSETLFREGKLTPSITILGCNVSIPAEVVILNSIVLPHKELSRS 419          
BLAST of GE213173 vs. ExPASy Swiss-Prot
Match: GMPAB_DANRE (Mannose-1-phosphate guanyltransferase alpha-B OS=Danio rerio GN=gmppab PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.545e-21
Identity = 56/126 (44.44%), Postives = 76/126 (60.32%), Query Frame = 1
Query:   25 YIHPSAKIHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN------GDYNAKL-------------GITILGEAVTVEDEVVVINSIVLPNKVLNVS 345
            YIHP+A I P+A +GPNVSI   V +G GVR+   I+L    ++++  VLNSI+GW S++G+WARV+G        D  AK+              ITILG  V +  EV++ NSIVLP+K LN S
Sbjct:  290 YIHPTANIDPSAVLGPNVSIGKGVTIGGGVRVRESIILHGAVLQDHCCVLNSIVGWDSTVGKWARVEGTPSDPNPNDPYAKIDSETLFRDGGLTPSITILGCNVNIPSEVIIRNSIVLPHKDLNRS 415          
BLAST of GE213173 vs. ExPASy Swiss-Prot
Match: MPG1_KLULA (Mannose-1-phosphate guanyltransferase OS=Kluyveromyces lactis GN=MPG1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.630e-21
Identity = 47/109 (43.12%), Postives = 76/109 (69.72%), Query Frame = 1
Query:   28 IHPSAKIHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVPR 354
            + P+AKI PTAK+GP+V I  NV +G GVR+   + L +  IK++A+V ++IIGW S++G+WAR++         G+T+LG+ V V+DE+ +    VLP+K ++V+VP+
Sbjct:  257 VDPTAKISPTAKVGPDVVIGPNVVIGDGVRITRSVALSNSHIKDHALVKSTIIGWNSTVGKWARLE---------GVTVLGDDVEVKDEIYINGGKVLPHKSISVNVPK 356          
The following BLAST results are available for this feature:
BLAST of GE213173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GMPAA_DANRE2.220e-2346.03Mannose-1-phosphate guanyltransferase alpha-A OS=D... [more]
GMPPA_XENTR7.143e-2246.83Mannose-1-phosphate guanyltransferase alpha OS=Xen... [more]
MPG1_CRYNE9.329e-2241.44Mannose-1-phosphate guanyltransferase OS=Cryptococ... [more]
GMPPA_PAPAN1.218e-2146.03Mannose-1-phosphate guanyltransferase alpha OS=Pap... [more]
GMPPA_HUMAN1.218e-2146.03Mannose-1-phosphate guanyltransferase alpha OS=Hom... [more]
GMPPA_RAT1.591e-2145.24Mannose-1-phosphate guanyltransferase alpha OS=Rat... [more]
GMPPA_MOUSE1.591e-2145.24Mannose-1-phosphate guanyltransferase alpha OS=Mus... [more]
GMPAB_XENLA2.078e-2145.24Mannose-1-phosphate guanyltransferase alpha-B OS=X... [more]
GMPAB_DANRE3.545e-2144.44Mannose-1-phosphate guanyltransferase alpha-B OS=D... [more]
MPG1_KLULA4.630e-2143.12Mannose-1-phosphate guanyltransferase OS=Kluyverom... [more]

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Properties
Property NameValue
Genbank description11 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213173 ID=GE213173; Name=GE213173; organism=Citrus sinensis; type=EST; length=369bp
ATTTCGAGCGGCCGCCCGGGCAGGTACATTCATCCATCTGCAAAAATTCA
TCCAACTGCGAAGATTGGTCCAAATGTCTCTATTTCAGCTAATGTTCGCG
TAGGAGCAGGTGTGAGGCTTATAAGTTGCATCGTCTTGGATGATGTTGAA
ATTAAGGAAAATGCAGTTGTTTTAAATTCTATCATTGGATGGAAGTCATC
TCTTGGGAGATGGGCACGTGTTCAGGGCAATGGAGATTACAACGCAAAGC
TTGGAATTACAATCCTTGGCGAAGCTGTAACCGTCGAAGACGAAGTTGTG
GTGATCAACAGCATTGTTCTTCCAAATAAGGTTCTTAACGTTAGTGTACC
TCGGCCGCGACCACGCTAA
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