EY753327

Overview
NameEY753327
Unique NameEY753327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7134 contig Csv1_Contig7134:293..1126. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753327 vs. ExPASy Swiss-Prot
Match: MYBG_DICDI (Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.205e-20
Identity = 67/208 (32.21%), Postives = 94/208 (45.19%), Query Frame = 3
Query:   15 SWTDEXHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVXXXXXXXXXXXXXXQKASKNVLPPLQASMAYPSVNALAHGFAAWDDASMLVNAEKMMPS-QDEYTNLHAIEADDXXXXXXXXXXXXTVGGIGSSARTEPSTDMPKQGKQVPVLHGIPDFAEVYSFIGSXFDPDTKGHVQKLKEMDPLNFETV 635
            +WTDE H KFLEAL LFDRDWKKIE FVGSKTVIQIRSHAQKYF+KVQKN T   +              QK   + +          +    +  FA W      +    +MP+  +   N   ++                V    SS R       P        L   P+F ++Y+F+ + F+ +     + L ++  ++ ET+
Sbjct:   43 NWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQIRSHAQKYFIKVQKNNTGERIPPPRPKRKSIQPYPQKQKHDGMGAFIPDSLSGNHFISSSSFATW------MTYRGLMPNISESQINPSDLQKQLEQLQQAQQYIQQAVTTAQSSQRNGGLPPNPSSNNGGTTL--TPNFPKIYAFLSNLFESNGTSFTEALSDLSMIDRETM 242          
BLAST of EY753327 vs. ExPASy Swiss-Prot
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.996e-12
Identity = 27/52 (51.92%), Postives = 43/52 (82.69%), Query Frame = 3
Query:   18 WTDEXHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTI 173
            WT++ H++FLEAL+L+ R W++IE+ +G+KT +QIRSHAQK+F K++K   +
Sbjct:   27 WTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAEV 78          
BLAST of EY753327 vs. ExPASy Swiss-Prot
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 29/48 (60.42%), Postives = 41/48 (85.42%), Query Frame = 3
Query:   18 WTDEXHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 161
            WT+E H++F+EAL+L+ R W+KIE+ V +KT +QIRSHAQK+F KV+K
Sbjct:   27 WTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQKFFSKVEK 74          
The following BLAST results are available for this feature:
BLAST of EY753327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MYBG_DICDI1.205e-2032.21Myb-like protein G OS=Dictyostelium discoideum GN=... [more]
LHY_ARATH5.996e-1251.92Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV... [more]
CCA1_ARATH1.023e-1160.42Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-E05-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753327 ID=EY753327; Name=EY753327; organism=Citrus sinensis; type=EST; length=834bp
CCACGCCGTCCGGAAGCTGGACTGACGAANAACACGACAAGTTCCTTGAA
GCTCTTCAGCTGTTTGACCGTGACTGGAAAAAAATTGAAGATTTTGTCGG
TTCAAAGACAGTCATTCAGATTCGGAGTCATGCTCAGAAATACTTTTTGA
AGGTTCAAAAGAATGGGACAATTGCACATGTTCCTCCTCCTCGTCCCAAG
CGGAAAGCTGCTCATCCTTACCCACAAAAGGCCTCGAAAAATGTTCTACC
GCCCCTTCAAGCATCCATGGCTTATCCATCAGTAAATGCCCTTGCACATG
GATTTGCTGCTTGGGATGATGCTTCCATGCTGGTAAATGCTGAGAAAATG
ATGCCATCGCAGGATGAATATACCAATCTTCACGCAATCGAAGCTGATGA
TATTGGATCAAAGGGGATATCGGGAATAGGTAATAGTACTGTTGGTGGCA
TTGGAAGCTCAGCTAGAACAGAACCTAGTACAGACATGCCAAAACAGGGG
AAACAAGTTCCCGTTCTTCATGGTATTCCAGACTTCGCTGAAGTGTATAG
CTTCATAGGGAGTNGTTTTGATCCAGACACCAAAGGCCATGTACAAAAGC
TCAAAGAAATGGATCCCTTAAATTTTGAAACAGTATTGTTATTGATGAGG
AACCTCAGCCTCAATTTGTCCAGTCCTGATTTTGAACCAATTGAGTCTGT
AGGGAGATACCATGGCCACCATAGCAAGGAGAGATTGCTGGATGATATTT
CAGCGGGATAGTGGGTTTCAATGTTTGTTTCTTAGCCTCTGCTCATTNCT
AGGGAACAGATGTTATCCAGTACGTTTTTTTGGG
back to top