EY753316

Overview
NameEY753316
Unique NameEY753316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:1204..1746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753316 vs. ExPASy Swiss-Prot
Match: RH56_ORYSJ (DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica GN=Os01g0549700 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.976e-31
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1
Query:    1 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 207
            IVINYDMPDSAD+YLHRVGRAGRFGTKGLAITFVSSASDSD+LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  364 IVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYMPS 432          
BLAST of EY753316 vs. ExPASy Swiss-Prot
Match: RH15_ORYSJ (DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp. japonica GN=Os01g0550000 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.976e-31
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1
Query:    1 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 207
            IVINYDMPDSAD+YLHRVGRAGRFGTKGLAITFVSSASDSD+LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  364 IVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYMPS 432          
BLAST of EY753316 vs. ExPASy Swiss-Prot
Match: RH56_ARATH (DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.402e-31
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1
Query:    1 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 207
            IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV+SASDS++LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  359 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 427          
BLAST of EY753316 vs. ExPASy Swiss-Prot
Match: RH15_ARATH (DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana GN=RH15 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.402e-31
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1
Query:    1 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 207
            IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV+SASDS++LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  359 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 427          
BLAST of EY753316 vs. ExPASy Swiss-Prot
Match: SUB2_SCHPO (ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe GN=uap56 PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 1.284e-22
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 1
Query:    1 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 201
            IVINYDMPDS D+YLHRVGRAGRFGTKGLAITF SS  DS IL+++Q RFEV+I ELP++ID  +YM
Sbjct:  366 IVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNITELPDEIDVGSYM 432          
BLAST of EY753316 vs. ExPASy Swiss-Prot
Match: UAP56_DROME (ATP-dependent RNA helicase WM6 OS=Drosophila melanogaster GN=Hel25E PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.860e-22
Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 1
Query:    1 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 201
            IV NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN+VQ RF+V+I ELPE+ID STY+
Sbjct:  355 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFDVNISELPEEIDLSTYI 421          
BLAST of EY753316 vs. ExPASy Swiss-Prot
Match: DDX39_HUMAN (ATP-dependent RNA helicase DDX39 OS=Homo sapiens GN=DDX39 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.735e-22
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 201
            IV NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct:  357 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423          
BLAST of EY753316 vs. ExPASy Swiss-Prot
Match: DDX39_RAT (ATP-dependent RNA helicase DDX39 OS=Rattus norvegicus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.879e-22
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 201
            IV NYDMP+ +DTYLHRV RAGRFGTKGLA+TFVS  +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct:  357 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423          
BLAST of EY753316 vs. ExPASy Swiss-Prot
Match: DDX39_MOUSE (ATP-dependent RNA helicase DDX39 OS=Mus musculus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.879e-22
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 201
            IV NYDMP+ +DTYLHRV RAGRFGTKGLA+TFVS  +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct:  357 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423          
BLAST of EY753316 vs. ExPASy Swiss-Prot
Match: UAP56_RAT (Spliceosome RNA helicase Bat1 OS=Rattus norvegicus GN=Bat1 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    1 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 201
            I  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  358 IAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
The following BLAST results are available for this feature:
BLAST of EY753316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RH56_ORYSJ1.976e-3195.65DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sa... [more]
RH15_ORYSJ1.976e-3195.65DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sa... [more]
RH56_ARATH4.402e-3194.20DEAD-box ATP-dependent RNA helicase 56 OS=Arabidop... [more]
RH15_ARATH4.402e-3194.20DEAD-box ATP-dependent RNA helicase 15 OS=Arabidop... [more]
SUB2_SCHPO1.284e-2274.63ATP-dependent RNA helicase uap56 OS=Schizosaccharo... [more]
UAP56_DROME2.860e-2273.13ATP-dependent RNA helicase WM6 OS=Drosophila melan... [more]
DDX39_HUMAN3.735e-2273.13ATP-dependent RNA helicase DDX39 OS=Homo sapiens G... [more]
DDX39_RAT4.879e-2271.64ATP-dependent RNA helicase DDX39 OS=Rattus norvegi... [more]
DDX39_MOUSE4.879e-2271.64ATP-dependent RNA helicase DDX39 OS=Mus musculus G... [more]
UAP56_RAT4.130e-2170.15Spliceosome RNA helicase Bat1 OS=Rattus norvegicus... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-D05-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753316 ID=EY753316; Name=EY753316; organism=Citrus sinensis; type=EST; length=543bp
ATTGTCATCAATTATGACATGCCAGATTCTGCTGATACTTATCTGCACAG
GGTTGGTAGAGCTGGTAGGTTTGGCACCAAGGGCCTTGCAATTACTTTTG
TATCATCTGCTTCAGACTCCGATATTCTCAATCAGGTTCAGGCAAGGTTT
GAAGTAGATATAAAGGAGCTTCCTGAGCAGATTGATACATCTACATACAT
GCCATCATAGTGGAGATCTGTTCTCTGATGTGGAAAATTTGAGGCGCATG
TGGAAGCAGGGTGCTGAAGGCCCTTTATGTATTTGTTTCTTTAGATGAAG
TCCAATGGCTTTCATATATGTTGCCTTGGAGATTTGTCAGATGGATCCCT
CTATTTTGTGGTTTTACGCTGCCTTTTCTTGTTTTTGGGATTTGTAGCCT
TTTAATACCTTCTGGGTACTGCTGCTATTGGGAATGTTATTCAACTGGTA
CCTTGGCTTGTATTAGAGTTCCTTGTGAGATAATTNTTATTGCACTGTTA
ATCGATTAGATTCTTAGACACCAAAAAAAAAAAAAAAAAAAAA
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