EY753301

Overview
NameEY753301
Unique NameEY753301
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753301_ssr19 microsatellite EY753301_ssr19:19..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753301 vs. ExPASy Swiss-Prot
Match: PSMD1_DROME (26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila melanogaster GN=Rpn2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.408e-15
Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 2
Query:  170 VSSAGGLLAMLNESHPSLKLHALSNLNSYDYKCWPEISTSVXMIEKGCEDEEFDKHHRQLAGLLVSKVFHDSGELNDQLSYTLGAGALTDVLIDHDYVITLTAKAIN 490
            ++SA G++++L+E  P LK+ AL  L++   + WPEIS S+  IE   ED  F ++  +LAG++ SKVF+  G   D L+Y LGAG L DV   ++Y  T+ AK I+
Sbjct:    3 LTSAAGIISLLDEPMPDLKVFALKKLDNIVDEFWPEISESIEKIEMLHEDRSFPEN--KLAGMVASKVFYHLGSFEDALTYALGAGDLFDVNARNEYTETIIAKCID 107          
BLAST of EY753301 vs. ExPASy Swiss-Prot
Match: PSMD1_RAT (26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus GN=Psmd1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  167 MVSSAGGLLAMLNESHPSLKLHALSNLNSYDYKCWPEISTSVXMIEKGCEDEEFDKHHRQLAGLLVSKVFHDSGELNDQLSYTLGAGALTDVLIDHDYVITLTAKAIN 490
            M++SA G++++L+E  P LK  AL  LN+     W EIS SV  IE   EDE F    RQ A L+ SKVF+  G   + L+Y LGAG L +V  + +YV T+ AK I+
Sbjct:    1 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGF--RSRQFAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCID 106          
BLAST of EY753301 vs. ExPASy Swiss-Prot
Match: PSMD1_PONAB (26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii GN=PSMD1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  167 MVSSAGGLLAMLNESHPSLKLHALSNLNSYDYKCWPEISTSVXMIEKGCEDEEFDKHHRQLAGLLVSKVFHDSGELNDQLSYTLGAGALTDVLIDHDYVITLTAKAIN 490
            M++SA G++++L+E  P LK  AL  LN+     W EIS SV  IE   EDE F    RQ A L+ SKVF+  G   + L+Y LGAG L +V  + +YV T+ AK I+
Sbjct:    1 MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGF--RSRQFAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCID 106          
BLAST of EY753301 vs. ExPASy Swiss-Prot
Match: PSMD1_MOUSE (26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus GN=Psmd1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  167 MVSSAGGLLAMLNESHPSLKLHALSNLNSYDYKCWPEISTSVXMIEKGCEDEEFDKHHRQLAGLLVSKVFHDSGELNDQLSYTLGAGALTDVLIDHDYVITLTAKAIN 490
            M++SA G++++L+E  P LK  AL  LN+     W EIS SV  IE   EDE F    RQ A L+ SKVF+  G   + L+Y LGAG L +V  + +YV T+ AK I+
Sbjct:    1 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGF--RSRQFAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCID 106          
BLAST of EY753301 vs. ExPASy Swiss-Prot
Match: PSMD1_HUMAN (26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  167 MVSSAGGLLAMLNESHPSLKLHALSNLNSYDYKCWPEISTSVXMIEKGCEDEEFDKHHRQLAGLLVSKVFHDSGELNDQLSYTLGAGALTDVLIDHDYVITLTAKAIN 490
            M++SA G++++L+E  P LK  AL  LN+     W EIS SV  IE   EDE F    RQ A L+ SKVF+  G   + L+Y LGAG L +V  + +YV T+ AK I+
Sbjct:    1 MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGF--RSRQFAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCID 106          
BLAST of EY753301 vs. ExPASy Swiss-Prot
Match: PSMD1_CHICK (26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus GN=PSMD1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  167 MVSSAGGLLAMLNESHPSLKLHALSNLNSYDYKCWPEISTSVXMIEKGCEDEEFDKHHRQLAGLLVSKVFHDSGELNDQLSYTLGAGALTDVLIDHDYVITLTAKAIN 490
            M++SA G++++L+E  P LK  AL  LN+     W EIS SV  IE   EDE F    RQ A L+ SKVF+  G   + L+Y LGAG L +V  + +YV T+ AK I+
Sbjct:    1 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGF--RSRQFAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCID 106          
BLAST of EY753301 vs. ExPASy Swiss-Prot
Match: RPN2_SCHPO (26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe GN=rpn2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 2
Query:  164 TMVSSAGGLLAMLNESHPSLKLHALSNLNSYDYKCWPEISTSVXMIEKGCEDEEFDKHHRQLAGLLVSKVFHDSGELNDQLSYTLGAGALTDVLIDHDYVITLTAKAIN 490
            ++++SAGGL+A+L+E    L++HAL  +  +  + WPEIS  V  IE   ED  F +  R+LA L+VSKV++  GE ++ L + L +G       + DY  TL  K I+
Sbjct:   10 SIITSAGGLMALLDEQERELQVHALLKIYEFIDQLWPEISDDVTKIEVMYEDHSFPE--RELAALVVSKVYYYLGEYDEALLFALSSGPKFLHDKNSDYKETLIFKCID 116          
The following BLAST results are available for this feature:
BLAST of EY753301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSMD1_DROME2.408e-1542.0626S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_RAT4.108e-1544.4426S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_PONAB4.108e-1544.4426S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_MOUSE4.108e-1544.4426S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_HUMAN4.108e-1544.4426S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_CHICK4.108e-1544.4426S proteasome non-ATPase regulatory subunit 1 OS=... [more]
RPN2_SCHPO1.237e-1138.5326S proteasome regulatory subunit rpn2 OS=Schizosa... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-C02-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753301 ID=EY753301; Name=EY753301; organism=Citrus sinensis; type=EST; length=797bp
CTTTCGACTGTGTCTCCCCTCTCTCTCTTTCAGGGCTAGGGTTTGGAATT
TTAATTCCGACGGAACCCCAAGTTGAAATCTCCGATTTTTATTTCAATTG
ATTAGAACCGAATTGAAACCCCTAGGGTTTTCGCTTTATATTACGGTTAA
AAATATGGCGGGGACAATGGTGAGCTCGGCCGGTGGTTTACTGGCTATGT
TGAACGAGAGTCATCCTTCGCTGAAACTGCACGCGCTTTCTAATCTCAAT
AGCTATGACTACAAGTGCTGGCCGGAGATCTCGACTAGTGTCCNCATGAT
AGAAAAGGGGTGTGAGGATGAAGAGTTTGATAAGCACCATAGACAACTCG
CTGGTCTTCTAGTCTCAAAGGTCTTCCATGACTCGGGTGAACTTAATGAT
CAACTGTCATATACTCTCGGAGCTGGGGCCTTGACTGATGTTCTCATAGA
TCATGATTATGTAATTACACTGACAGCTAAGGCTATCAATGATATATAAT
AGCTTGAAGAACTAGGGCTACTTTTCAAATGATCAAAAGCCGTATGTGGG
TTCAAGGCCGGAGGAGATTGTTGCATATCAATGCCAATAACTGATGATGC
GAGGACAAAATTCTCACGGGATAGTGGTTATTTTGGAAAGTTAAAAGGAT
TATTTTCACACTCCTGAGTTACGGGGTAAACGGGCTGTCTGTGCCTGCAG
AAAAGGGGATGTTCTGGTATATATGCGGGGGTTAGGTGTTTGTTGTGTGC
GATATTACTATTTTATGTGTTCACCTGCCACGCCTTTCTCCTTTTAC
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