EY753277

Overview
NameEY753277
Unique NameEY753277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753277 vs. ExPASy Swiss-Prot
Match: HDA19_ARATH (Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.901e-62
Identity = 116/147 (78.91%), Postives = 123/147 (83.67%), Query Frame = 2
Query:  131 MDTGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQHDQLRQLKRFNVGEDCPVFDRLFSLLSNLCWGLCWWCCQV*TPASEIFAINWARG 571
            MDTGGNSL SG DGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQ+MQVLKPFPAR+RDLCRFHADDYVSFLRSITPETQ DQ+RQLKRFNVGEDCPVFD L+S       G      ++     +I AINWA G
Sbjct:    1 MDTGGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGSVKLNHGLCDI-AINWAGG 146          
BLAST of EY753277 vs. ExPASy Swiss-Prot
Match: HDA19_MAIZE (Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.805e-58
Identity = 89/115 (77.39%), Postives = 103/115 (89.57%), Query Frame = 2
Query:  137 TGGNSLPS-GTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQHDQLRQLKRFNVGEDCPVFDRLFS 478
            +GGNSLPS G DG KR+VCYFYDP+VGNYYYGQGHPMKPHRIRMTH+LLA YGLL  MQV +P PARER+LCRFHA++Y++FLRS+TPETQ DQ+R LKRFNVGE+CPV D L+S
Sbjct:    8 SGGNSLPSVGPDGQKRRVCYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLARYGLLNQMQVYRPNPARERELCRFHAEEYINFLRSVTPETQQDQIRLLKRFNVGEECPVLDGLYS 122          

HSP 2 Score: 46.2098 bits (108), Expect = 5.805e-58
Identity = 24/44 (54.55%), Postives = 25/44 (56.82%), Query Frame = 3
Query:  480 FCQTYAGGSVGGAVKFELRPQRFLLSIGPGDLQHGKKCETIGIC 611
            FCQTYAG SVGGAVKF       +     G L H KKCE  G C
Sbjct:  123 FCQTYAGASVGGAVKF--NHGHDIAINWSGGLHHAKKCEASGFC 164          
BLAST of EY753277 vs. ExPASy Swiss-Prot
Match: HDAC1_CHICK (Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.241e-37
Identity = 71/136 (52.21%), Postives = 94/136 (69.12%), Query Frame = 2
Query:  164 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQHDQLRQLKRFNVGEDCPVFDRLFSLLSNLCWGLCWWCCQV*TPASEIFAINWARG 571
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFD LF        G      ++    ++I A+NWA G
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDI-AVNWAGG 138          
BLAST of EY753277 vs. ExPASy Swiss-Prot
Match: HDAC1_RAT (Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.620e-37
Identity = 71/136 (52.21%), Postives = 94/136 (69.12%), Query Frame = 2
Query:  164 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQHDQLRQLKRFNVGEDCPVFDRLFSLLSNLCWGLCWWCCQV*TPASEIFAINWARG 571
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFD LF        G      ++    ++I A+NWA G
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDI-AVNWAGG 138          
BLAST of EY753277 vs. ExPASy Swiss-Prot
Match: HDAC1_MOUSE (Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.620e-37
Identity = 71/136 (52.21%), Postives = 94/136 (69.12%), Query Frame = 2
Query:  164 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQHDQLRQLKRFNVGEDCPVFDRLFSLLSNLCWGLCWWCCQV*TPASEIFAINWARG 571
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFD LF        G      ++    ++I A+NWA G
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDI-AVNWAGG 138          
BLAST of EY753277 vs. ExPASy Swiss-Prot
Match: HDAC1_BOVIN (Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.620e-37
Identity = 71/136 (52.21%), Postives = 94/136 (69.12%), Query Frame = 2
Query:  164 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQHDQLRQLKRFNVGEDCPVFDRLFSLLSNLCWGLCWWCCQV*TPASEIFAINWARG 571
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFD LF        G      ++    ++I A+NWA G
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDI-AVNWAGG 138          
BLAST of EY753277 vs. ExPASy Swiss-Prot
Match: HDAC1_PONAB (Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.610e-37
Identity = 70/136 (51.47%), Postives = 94/136 (69.12%), Query Frame = 2
Query:  164 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQHDQLRQLKRFNVGEDCPVFDRLFSLLSNLCWGLCWWCCQV*TPASEIFAINWARG 571
            T G +RKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFD LF        G      ++    ++I A+NWA G
Sbjct:    4 TQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDI-AVNWAGG 138          
BLAST of EY753277 vs. ExPASy Swiss-Prot
Match: HDAC1_HUMAN (Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.610e-37
Identity = 70/136 (51.47%), Postives = 94/136 (69.12%), Query Frame = 2
Query:  164 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQHDQLRQLKRFNVGEDCPVFDRLFSLLSNLCWGLCWWCCQV*TPASEIFAINWARG 571
            T G +RKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFD LF        G      ++    ++I A+NWA G
Sbjct:    4 TQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDI-AVNWAGG 138          
BLAST of EY753277 vs. ExPASy Swiss-Prot
Match: HDA1A_XENLA (Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-A PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.372e-36
Identity = 69/136 (50.74%), Postives = 94/136 (69.12%), Query Frame = 2
Query:  164 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQHDQLRQLKRFNVGEDCPVFDRLFSLLSNLCWGLCWWCCQV*TPASEIFAINWARG 571
            T G K+KVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   D+ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFD LF        G      ++    ++I ++NW+ G
Sbjct:    4 TLGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIFRPHKASAEDMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDI-SVNWSGG 138          
BLAST of EY753277 vs. ExPASy Swiss-Prot
Match: HDA6_ARATH (Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.807e-36
Identity = 75/148 (50.68%), Postives = 97/148 (65.54%), Query Frame = 2
Query:  134 DTGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQHD--QLRQLKRFNVGEDCPVFDRLFSLLSNLCWGLCWWCCQV*TPASEIFAINWARG 571
            D  G SLPSG DG KR+V YFY+P +G+YYYGQGHPMKPHRIRM H+L+ HY L + +++ +P  A   D+ RFH+ +YV FL S++PE+  D    R L+RFNVGEDCPVFD LF        G      ++    ++I AINW  G
Sbjct:    4 DESGISLPSGPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRRLEISRPSLADASDIGRFHSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFDFCRASAGGSIGAAVKLNRQDADI-AINWGGG 150          
The following BLAST results are available for this feature:
BLAST of EY753277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
HDA19_ARATH1.901e-6278.91Histone deacetylase 19 OS=Arabidopsis thaliana GN=... [more]
HDA19_MAIZE5.805e-5877.39Probable histone deacetylase 19 OS=Zea mays PE=2 S... [more]
HDAC1_CHICK1.241e-3752.21Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE... [more]
HDAC1_RAT1.620e-3752.21Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac... [more]
HDAC1_MOUSE1.620e-3752.21Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=... [more]
HDAC1_BOVIN1.620e-3752.21Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 ... [more]
HDAC1_PONAB3.610e-3751.47Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=... [more]
HDAC1_HUMAN3.610e-3751.47Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=... [more]
HDA1A_XENLA1.372e-3650.74Probable histone deacetylase 1-A OS=Xenopus laevis... [more]
HDA6_ARATH6.807e-3650.68Histone deacetylase 6 OS=Arabidopsis thaliana GN=H... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-083-H11-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753277 ID=EY753277; Name=EY753277; organism=Citrus sinensis; type=EST; length=907bp
GGGTAACGGGTTCCGGAATTCCGGGTCGACCACGCGTCCGCTGTTTTATT
CTCTTGAGGTCCCTTTTCGATGCATTCTTAGTTAGTGTTGGCTCTCCCAG
TAACTGCAGGCCCCAAGAAATATTATTCATATGGACACTGGAGGCAATTC
TTTACCATCTGGTACTGATGGCGTTAAGAGAAAGGTGTGTTATTTCTACG
ACCCAGAGGTGGGCAATTACTACTATGGACAGGGTCACCCGATGAAACCC
CATCGCATTCGTATGACCCATGCCCTTCTCGCCCACTACGGCTTGCTTCA
GAACATGCAGGTCCTCAAACCTTTTCCTGCTAGGGAAAGGGATCTTTGCC
GCTTCCATGCCGATGATTATGTCTCCTTCCTCAGGAGTATCACCCCTGAG
ACTCAGCATGATCAGCTTAGGCAGCTCAAGCGCTTTAATGTTGGTGAAGA
TTGCCCTGTCTTTGACCGTCTTTTCTCCCTTCTGTCAAACTTATGCTGGG
GGCTCTGTTGGTGGTGCTGTCAAGTTTGAACTCCGGCCTCAGAGATTTTT
GCTATCAATTGGGCCCGGGGACCTACAACATGGTAAAAAATGTGAAACTA
TAGGAATCTGTAAAAGCAAGAGAAATTATATAGGACCATTTTAGATCAAA
CTTAAACACTATGAAACAGGATTTATATAGAAATATTTATTCACCATAAA
ATAAATGATTAAAAAGGAACATTATTTTAATAATTTAAAAGGGCTATTAA
AGGAACGTTTGTAAAGGATACAGAAAAATAACCTCACGGGATTATCGTAA
GTACGACGGAGATTAGATCTTTACGAGAGGAAAAAACAATCTTCACACCA
AATGTTAGCGGAAGAATTAGTAGATAAGCATTATTAAATCCTCATCCTAT
TCTCATG
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