GE213164

Overview
NameGE213164
Unique NameGE213164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213164 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.126e-47
Identity = 95/155 (61.29%), Postives = 118/155 (76.13%), Query Frame = 1
Query:   25 YTLMGIPHGTASTKQTITLTPLGEACSRLDLTAIHEILEKVGYKDDEGIANELSFQMWTDQIQETLNSKKRGDAAFRAKDFPTAIECYTHFIDGGTMVSPTVFARRCLCYLLSDMPQEALGDAMQAQVISPD*PTAFYLQAAAIIQSLCEIQSHS 489
            + L+G+P+   +T     L+PLGEAC R DLTAIHEI+EK+GYKDDEG   ELSFQMWTDQ+Q+TL  KK+GD+AFR KDF  AIECY+ FI+ GTM SPTV AR+ LCYL++DMP+EAL +AMQAQVISP    A YLQA A+     E ++H+
Sbjct:  322 HQLLGVPNSATTT----ALSPLGEACLRSDLTAIHEIIEKLGYKDDEGATTELSFQMWTDQMQDTLVFKKKGDSAFRHKDFAKAIECYSQFIEVGTMGSPTVHARQSLCYLMNDMPREALNNAMQAQVISPAWHIASYLQAVALSALGQENEAHT 472          
BLAST of GE213164 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.412e-43
Identity = 90/146 (61.64%), Postives = 109/146 (74.66%), Query Frame = 1
Query:   25 YTLMGIP--HGTASTKQTITLTPLGEACSRLDLTAIHEILEKVGYKDDEGIANELSFQMWTDQIQETLNSKKRGDAAFRAKDFPTAIECYTHFIDGGTMVSPTVFARRCLCYLLSDMPQEALGDAMQAQVISPD*PTAFYLQAAAI 456
            Y ++GI       ST Q   L+PLGEACSR+DLTAIH+IL    Y+DDEG  NELSFQ WT Q+++ L+++KRGD +FR KDF TAI+CY+ FID GTMVSPTVF RR LCYLL D P  AL DAMQAQ + PD PTAFY+Q+ A+
Sbjct:  339 YVMLGIKKQEEAPSTPQR-PLSPLGEACSRMDLTAIHQILVMTHYRDDEG-TNELSFQEWTQQMKDMLDARKRGDQSFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVAL 482          
BLAST of GE213164 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.339e-30
Identity = 65/144 (45.14%), Postives = 94/144 (65.28%), Query Frame = 1
Query:   25 YTLMGIPHGTASTKQTITLTPLGEACSRLDLTAIHEILEKVGYKDDEGIANELSFQMWTDQIQETLNSKKRGDAAFRAKDFPTAIECYTHFIDGGTMVSPTVFARRCLCYLLSDMPQEALGDAMQAQVISPD*PTAFYLQAAAI 456
            Y ++ + +       +  L+PLGEAC R+DL +IH IL   GY DD+ I  ELSF+ W  +++E  + ++ GD AF  +DF TAI CY+ F++  ++V P+V+ARR L YL  D P++AL D M AQ + PD PTAFYLQ+ A+
Sbjct:  300 YEVVEMTNQEKDASSSSNLSPLGEACLRMDLASIHSILVLAGYDDDKDII-ELSFEEWIQEVKELQDVRRNGDRAFVEQDFKTAIACYSQFVEERSLVYPSVYARRSLSYLFCDEPEKALLDGMHAQGVFPDWPTAFYLQSVAL 442          
The following BLAST results are available for this feature:
BLAST of GE213164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y5126_ARATH6.126e-4761.29Probable serine/threonine-protein kinase At5g41260... [more]
Y4523_ARATH1.412e-4361.64Probable serine/threonine-protein kinase At4g35230... [more]
SSP_ARATH2.339e-3045.14Probable inactive receptor-like kinase SSP OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC27 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213164 ID=GE213164; Name=GE213164; organism=Citrus sinensis; type=EST; length=559bp
ATTTCGAGCGGCCGCCCGGGCAGGTACACTTTGATGGGTATTCCGCATGG
AACTGCATCCACCAAGCAAACGATTACACTTACTCCTCTGGGTGAAGCTT
GTTCAAGACTTGACCTTACTGCAATTCATGAAATATTGGAGAAGGTTGGA
TACAAGGATGATGAGGGAATTGCAAATGAGCTTTCTTTCCAAATGTGGAC
AGATCAAATACAGGAGACATTGAATTCCAAGAAGCGTGGAGATGCTGCTT
TTCGAGCTAAAGACTTCCCCACTGCTATTGAATGTTACACGCATTTCATT
GATGGTGGGACCATGGTATCACCGACAGTGTTTGCTAGACGATGCTTATG
TTACTTGCTGAGTGACATGCCTCAAGAAGCTCTTGGAGACGCAATGCAAG
CTCAAGTCATATCTCCAGACTGACCCACTGCCTTCTACCTTCAAGCTGCT
GCCATAATCCAGAGCTTGTGCGAGATACAGAGCCACTCTCACAGATGGCA
CAAACTTGGAAGCCAAAAAACATAGAAACTGAAAAGTACCTCGGCCGCGA
CCACGCTAA
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