EY753267

Overview
NameEY753267
Unique NameEY753267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY753267 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.167e-13
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:   68 ETKGTKXKDFGASLMSDESIQSEISNLRDKVEEYAKRFPTVGFEKETMKYKN 223
            ET+GTK KDF A+L S   I+SEI+ LR  VEEYAK+FPT+GFEKETMKYKN
Sbjct:  467 ETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518
[Close]
BLAST of EY753267 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 2 
Query:   68 ETKGTKXKDFGASLMSDESIQSEISNLRDKVEEYAKRFPTVGFEKETMKYKN 223
            E +GTK KDF +++ S  +IQSEI+ LR +VEE+AK+FPT+GFEKETMKYKN
Sbjct:  466 EAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517
[Close]
BLAST of EY753267 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.076e-12
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 2 
Query:   68 ETKGTKXKDFGASLMSDESIQSEISNLRDKVEEYAKRFPTVGFEKETMKYKN 223
            E KGTK KDF  + M   +IQSEIS LR  VEEYAK+FPT+GFEKETMKYKN
Sbjct:  467 EAKGTKLKDF-VTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517
[Close]
BLAST of EY753267 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 2 
Query:   68 ETKGTKXKDFGASLMSDESIQSEISNLRDKVEEYAKRFPTVGFEKETMKYKN 223
            E +GTK KDF A++ S  + QSEIS LR  VEEYAK+FPT+GFEKETMKYKN
Sbjct:  467 EAQGTKLKDFVAAMQSS-AFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517
The following BLAST results are available for this feature:
BLAST of EY753267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GLYM_SOLTU2.167e-1371.15Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH8.236e-1365.38Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR1.076e-1271.15Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYN_FLAPR4.088e-1269.23Serine hydroxymethyltransferase 2, mitochondrial O... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-083-H01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753267 ID=EY753267; Name=EY753267; organism=Citrus sinensis; type=EST; length=922bp
GGACCGGGGGCCCGGAATTCCGGGGTCGACCCCGCGTCCGCGTGAAGTTG
GCNNTAACCCTCCCTATGAGACTAAAGGAACAAAGNTGAAGGATTTTGGA
GCCTCTTTGATGTCAGATGAAAGCATTCAATCTGAGATTTCAAACCTCCG
AGACAAAGTCGAGGAGTACGCAAAACGATTTCCTACTGTTGGTTTTGAGA
AAGAAACAATGAAATACAAGAACTGAAGGATGATTAATGATATTTATGCA
GCAAGAGTTATGCAGACGAATTTATTGTCAGATAGGGAACCAGTGTCAGC
CTCGAACGCATTGAGATTTTAAGATGAAAATTGTCGAAGTTTAGTGCATG
CTGGACTTCCGTCTATGAGATCCACAGATGAAATCAGAATCTTCATCCCA
TTGGTAACTTGAATTCCGTCAGCTGGCCCTTTCGCAAAGTATAAACAGTG
ATGTTTGTATCAAAAATTTATTTGGAAAAATTTCTAAATTGTGTCATTGC
AACGACGTTACCTGGTCCCTTTTTGCAATGTATAATAAACATTTGATGTT
TATACCGAATGTGTTTATCGGAATAAAATATTAATTTGTTTCACAGGGCA
CGGCAATGGTTGAAACAGGTCTTCCCCATTGCAGCATGATTTGGTTTTAA
TGAATAAGCGAAATGGATGGAACTTCCAAAGTAAAAAGAAAAGCACCATT
TTTTAGTCCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGCCGCT
CCTAAAGGAACCCAGGTTTACAAACGCCGGGAAGAGCACAAGCCAAAAGC
CATTCCAATAGGGGGACCCCAAATTACCAATCAATCGGGCCGGCCGTTTT
TAATCCCACCGGAGACTGGGAAATACCCCTGGGACGTATCTCCAATTTTT
ATAAGCCCCGTGGGAGAGACAA
back to top