EY725420

Overview
NameEY725420
Unique NameEY725420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY725420 vs. ExPASy Swiss-Prot
Match: MAPT_ARATH (Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.093e-15
Identity = 55/195 (28.21%), Postives = 98/195 (50.26%), Query Frame = 3 
Query:  126 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLS----------PRVGASAFVT--MLKLLSDALFTEQDTNAQVGXXXXXXXXXXXXQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLGV 668
            LK  +   ++KL+DRDTY  A ++L+    ++ P  LP FL+C+  + S  KP V+KEC+H+++ + + H  + + ++TKII  I +  +D +S ++  C  T+ +LS             G+++      +K L +A+  EQ+   Q G              P      ++  R+ +LL +  F AKA+ L V
Sbjct:   42 LKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKECLHLLSYVCSLHCDSTAAHLTKIIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEEGTNTGSASLAVGLFVKPLFEAM-GEQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRICKLLSNSSFLAKASLLPV 235
The following BLAST results are available for this feature:
BLAST of EY725420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MAPT_ARATH2.093e-1528.21Microtubule-associated protein TORTIFOLIA1 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-007-A03-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY725420 ID=EY725420; Name=EY725420; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGCTGACAGTCTCATCACCACCGCTAATGTTACCGGCGACA
TCTCGAATTCCGGCGGCCCCACCACCACCAGAAGAATCGTAACTAGAAGC
AGCAACCGAGGCAATGGCTCACGCTCTCAAAACCAGCGTGAACGGTCTCC
TAAACAAACTGTCCGACCGGGACACGTACTCACAAGCAGCAAAAGAACTG
GACTCTATCGCCGCCACTGTGGATCCCACTCTACTGCCGACATTTCTCTC
CTGCATTCTCTCGACAAACTCCTCTGACAAACCTGGAGTACGCAAAGAAT
GCATCCACGTCATCGCCACTCTTTCGAATTCTCACAATCTCTCCCCTTAC
ATCACCAAAATCATCAACAGCATCACGCGAAACTTCCGAGACAAGAACTC
CGCCCTGCAGGCGACGTGCATCAGCACGGTTTCCTCTCTCTCGCCGCGTG
TCGGCGCATCGGCGTTCGTGACGATGCTGAAGCTGCTGTCCGACGCGCTC
TTCACTGAGCAGGACACGAACGCGCAGGTAGGTGCGGCACTGTGTCTGGC
TGCGACAATTGATGCGGCGCAGGATCCGGATGCGGGGAAATTGGGGAGAA
TGGAGGTGAGGTTGGAGAGGTTGCTGAAGAGTGAAGTATTTAAGGCGAAA
GCTGCGGGTTTGGGTGTGGGTTGGGAGCGTGATCGGCTCGGTTGGCGGGG
AGGGCTCGGGTCTCAAGGGGTTAAGGAAGTTGTTTGTTGGGTTTTTTAAG
TAACCAAAAATGGGCGGGAAAGGAAAACTGCTTGCGAAGGGCCTGGGGAG
GGTGGGGGGCCCGGAAAAAAGATGCCCTGGCCCAAATTTAAAAGGAAAAG
GGTTTGAAAAATTTT
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