FK826709

Overview
NameFK826709
Unique NameFK826709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length184
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FK826709 vs. ExPASy Swiss-Prot
Match: COPG2_ORYSJ (Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica GN=Os07g0201100 PE=2 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 1.176e-11
Identity = 20/23 (86.96%), Postives = 22/23 (95.65%), Query Frame = -2 
Query:  115 RSLMNFLSNMLREEGGFEYKKRL 183
            RSLMNFLSN+LREEGGFEYKK +
Sbjct:  401 RSLMNFLSNILREEGGFEYKKAI 423

HSP 2 Score: 43.5134 bits (101), Expect = 1.176e-11
Identity = 20/23 (86.96%), Postives = 23/23 (100.00%), Query Frame = -1 
Query:   56 KKAIVDSIVILIRDIPDAKDNGL 124
            KKAIVDSI+ILIRDIPDAK++GL
Sbjct:  420 KKAIVDSIIILIRDIPDAKESGL 442
The following BLAST results are available for this feature:
BLAST of FK826709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COPG2_ORYSJ1.176e-1186.96Coatomer subunit gamma-2 OS=Oryza sativa subsp. ja... [more]
back to top
Properties
Property NameValue
Genbank descriptionclone033 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 033, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826709 ID=FK826709; Name=FK826709; organism=Citrus sinensis; type=EST; length=184bp
ACTTATACATCAATTCAACAACCACAAGCTGAGTTAATATCAAAAGGTTG
TTCTGCAACCCATTGTCTTTGGCATCAGGGATATCTCTGATCAGGATCAC
TATTGAATCTACGATAGCCTTTTTTTGTATTCAAATCCACCTTCTTCTCT
CAACATGTTGCTCAAAAAGTTCATCAGGGATCTG
back to top