EY725008

Overview
NameEY725008
Unique NameEY725008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY725008 vs. ExPASy Swiss-Prot
Match: YDVG_SCHPO (Uncharacterized helicase C6F12.16c OS=Schizosaccharomyces pombe GN=SPAC6F12.16c PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.782e-15
Identity = 47/93 (50.54%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  110 LALLKRGIGVHHPGLLPILNEVTDILFHEWMY*L*GXXXXXXXXSLNMPAGNGESPYVRTLDADDVIWISSGNYIHISGRAGRPGIDERGICI 388
            L LL+RGIG+HH GLLPIL EV +ILF E +  +           LNMPA       VR  D     WIS G YI +SGRAGR G+D+RGI I
Sbjct:  513 LPLLRRGIGIHHSGLLPILKEVIEILFQEGLLKVL-FATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYIQMSGRAGRRGLDDRGIVI 604          
BLAST of EY725008 vs. ExPASy Swiss-Prot
Match: SK2L2_HUMAN (Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 4.745e-15
Identity = 47/93 (50.54%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  110 LALLKRGIGVHHPGLLPILNEVTDILFHEWMY*L*GXXXXXXXXSLNMPAGNGESPYVRTLDADDVIWISSGNYIHISGRAGRPGIDERGICI 388
            L LLKRGIG+HH GLLPIL E  +ILF E +              +NMPA        R  D  D  WISSG YI +SGRAGR G+D+RGI I
Sbjct:  445 LPLLKRGIGIHHGGLLPILKETIEILFSEGLIKAL-FATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVI 536          
BLAST of EY725008 vs. ExPASy Swiss-Prot
Match: SK2L2_MOUSE (Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.197e-15
Identity = 47/93 (50.54%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  110 LALLKRGIGVHHPGLLPILNEVTDILFHEWMY*L*GXXXXXXXXSLNMPAGNGESPYVRTLDADDVIWISSGNYIHISGRAGRPGIDERGICI 388
            L LLKRGIG+HH GLLPIL E  +ILF E +              +NMPA        R  D  D  WISSG YI +SGRAGR G+D+RGI I
Sbjct:  443 LPLLKRGIGIHHGGLLPILKETIEILFSEGLIKAL-FATETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVI 534          
BLAST of EY725008 vs. ExPASy Swiss-Prot
Match: MTR4_YEAST (ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae GN=MTR4 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.197e-15
Identity = 46/93 (49.46%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  110 LALLKRGIGVHHPGLLPILNEVTDILFHEWMY*L*GXXXXXXXXSLNMPAGNGESPYVRTLDADDVIWISSGNYIHISGRAGRPGIDERGICI 388
            L LL+RGIG+HH GLLPIL EV +ILF E    +           LNMPA       VR  D     W+S G YI +SGRAGR G+D+RGI I
Sbjct:  465 LPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVL-FATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVI 556          
BLAST of EY725008 vs. ExPASy Swiss-Prot
Match: MTR4_CAEEL (mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.204e-12
Identity = 43/96 (44.79%), Postives = 54/96 (56.25%), Query Frame = 2
Query:  101 IKYLALLKRGIGVHHPGLLPILNEVTDILFHEWMY*L*GXXXXXXXXSLNMPAGNGESPYVRTLDADDVIWISSGNYIHISGRAGRPGIDERGICI 388
            +  L LL+RGIGVHH GL+PIL E  +ILF E +  +           LNMPA        R  D  D  +I+SG YI ++GRAGR G D+RG  I
Sbjct:  429 LNILPLLRRGIGVHHSGLMPILKETIEILFGEGLVKV-LFATETFSMGLNMPARTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRGKDDRGTVI 523          
BLAST of EY725008 vs. ExPASy Swiss-Prot
Match: YE02_SCHPO (Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe GN=SPAC17H9.02 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.015e-12
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  113 ALLKRGIGVHHPGLLPILNEVTDILFHEWMY*L*GXXXXXXXXSLNMPAGNGESPYVRTLDADDVIWISSGNYIHISGRAGRPGIDERGICI 388
            +LL RGIG+HH GLLPIL E+ +ILF E +  +           LNMPA        +    ++  W++SG Y+ +SGRAGR GID +G+ I
Sbjct:  430 SLLLRGIGIHHSGLLPILKELVEILFQEGLVRI-LFATETFSIGLNMPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRGIDTKGLSI 520          

HSP 2 Score: 20.7866 bits (42), Expect = 3.015e-12
Identity = 10/25 (40.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  460 NVYPLNYDMGESPIRCEXGSPEDLL 534
            + + L+Y M  + +R E  SPED+L
Sbjct:  545 SAFHLSYGMILNLMRIEEISPEDIL 569          
The following BLAST results are available for this feature:
BLAST of EY725008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
YDVG_SCHPO2.782e-1550.54Uncharacterized helicase C6F12.16c OS=Schizosaccha... [more]
SK2L2_HUMAN4.745e-1550.54Superkiller viralicidic activity 2-like 2 OS=Homo ... [more]
SK2L2_MOUSE6.197e-1550.54Superkiller viralicidic activity 2-like 2 OS=Mus m... [more]
MTR4_YEAST6.197e-1549.46ATP-dependent RNA helicase DOB1 OS=Saccharomyces c... [more]
MTR4_CAEEL2.204e-1244.79mRNA transport homolog 4 OS=Caenorhabditis elegans... [more]
YE02_SCHPO3.015e-1242.39Uncharacterized helicase C17H9.02 OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-084-E12-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY725008 ID=EY725008; Name=EY725008; organism=Citrus sinensis; type=EST; length=871bp
CACGCGTCCGATTACTGAAAAATATGAAACGGTGANCTAAAAAGAATCTT
TCTGGAGTGCCCGTACATGCTAGCAGATGATCACCATAACTGTCTCATGT
ATCAAATATCTAGCCCTATTGAAACGTGGAATAGGTGTGCATCATCCTGG
CTTGCTTCCTATATTGAACGAAGTGACTGACATATTATTCCACGAATGGA
TGTATTAACTGTGAGGCCCGCCACCGATCACTCCTCCCATAAGTTTGAAC
ATGCCTGCTGGAAATGGGGAGTCTCCCTATGTGCGTACATTAGACGCTGA
CGATGTGATATGGATATCCAGTGGAAACTACATACATATCAGTGGCCGAG
CTGGTCGTCCTGGCATTGATGAACGCGGGATATGTATCCTCTTGGTCGAT
GACCCCTGGAAGCTCCTACTGCTAGGCTCACGCTAAGGTGACGTGCTGAC
GCTTTGAAGAATGTCTATCCCCTAAACTACGATATGGGTGAGAGTCCAAT
TCGCTGTGAATANGGGAGTCCAGAAGATTTGCTCCCTAATACGTCTGACT
CCATCTACCTAGACACGCCCTCCCGTATCTAGAGAAACAACAAACGTCCT
GAACTAGGACAAGGCTTCCGAGGTATAAGGGATTTGGCATATTTCGCCCA
ATCGGCATACACGGGACCCGATTACACAAAATCTTAACGCGAATTTCAGC
AAAGTGTGTGCGCTGCCAGTGAGGTGGGACCGCTGGGGGGGACGGCGCGC
GGAGCGCGTATGGGCTGGGGGGCGGGAGAGACGCCACTATCTCTCCGCCC
ACTGAAGATAACCGGTAAGAGGGGCGCGGTCCACGGACATCGCGAGAGGA
TACCGTCCACCATCAGGGGCC
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