FE659309

Overview
NameFE659309
Unique NameFE659309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13680 contig Csv1_Contig13680:1..298. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659309 vs. ExPASy Swiss-Prot
Match: DCAM_MAIZE (S-adenosylmethionine decarboxylase proenzyme OS=Zea mays GN=SAMDC PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.048e-28
Identity = 60/84 (71.43%), Postives = 73/84 (86.90%), Query Frame = 2
Query:    2 EKRLKITFSPAPIFTDPSGLGLRALTRSQLDSFLVLANCTIFSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQI 253
            EKRL+ITFS AP+F DP G GLRAL+R+Q+DS L LA CTI S+LSN +FDSYVLSESSLF++P KI++KTCGTTKLL +IP+I
Sbjct:   21 EKRLEITFSEAPVFVDPHGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYPLKIVIKTCGTTKLLLTIPRI 104          
BLAST of FE659309 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSJ (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. japonica GN=SAMDC PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.982e-28
Identity = 59/84 (70.24%), Postives = 72/84 (85.71%), Query Frame = 2
Query:    2 EKRLKITFSPAPIFTDPSGLGLRALTRSQLDSFLVLANCTIFSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQI 253
            EKRL+ITFS AP+F DP G GLRAL+R+Q+DS L LA CTI S+LSN +FDSYVLSESSLF++  KI++KTCGTTKLL +IP+I
Sbjct:   21 EKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRI 104          
BLAST of FE659309 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSI (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. indica GN=SAMDC PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.982e-28
Identity = 59/84 (70.24%), Postives = 72/84 (85.71%), Query Frame = 2
Query:    2 EKRLKITFSPAPIFTDPSGLGLRALTRSQLDSFLVLANCTIFSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQI 253
            EKRL+ITFS AP+F DP G GLRAL+R+Q+DS L LA CTI S+LSN +FDSYVLSESSLF++  KI++KTCGTTKLL +IP+I
Sbjct:   21 EKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRI 104          
BLAST of FE659309 vs. ExPASy Swiss-Prot
Match: DCAM_HORCH (S-adenosylmethionine decarboxylase proenzyme OS=Hordeum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.673e-26
Identity = 58/84 (69.05%), Postives = 70/84 (83.33%), Query Frame = 2
Query:    2 EKRLKITFSPAPIFTDPSGLGLRALTRSQLDSFLVLANCTIFSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQI 253
            EKRL+ITFS A IF DP G GLRAL+R+Q+DS L LA CTI S+LSN +FDSYVLSESSLF++  KI++KTCGTT LL +IP+I
Sbjct:   14 EKRLEITFSEASIFADPHGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSQKIVIKTCGTTMLLLTIPRI 97          
BLAST of FE659309 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.155e-25
Identity = 59/84 (70.24%), Postives = 66/84 (78.57%), Query Frame = 2
Query:    2 EKRLKITFSPAPIFTDPSGLGLRALTRSQLDSFLVLANCTIFSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQI 253
            EKRL+I+F  A IF+DP G GLRAL++ QLD  L  A CTI S LSN E DSYVLSESSLFV+P KII+KTCGTTKLL SIP I
Sbjct:   14 EKRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPI 97          
BLAST of FE659309 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.199e-24
Identity = 58/84 (69.05%), Postives = 65/84 (77.38%), Query Frame = 2
Query:    2 EKRLKITFSPAPIFTDPSGLGLRALTRSQLDSFLVLANCTIFSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQI 253
            E RL+I+F  A IF+DP G GLRAL++ QLD  L  A CTI S LSN E DSYVLSESSLFV+P KII+KTCGTTKLL SIP I
Sbjct:   14 ENRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPI 97          
BLAST of FE659309 vs. ExPASy Swiss-Prot
Match: DCAM1_ARATH (S-adenosylmethionine decarboxylase proenzyme 1 OS=Arabidopsis thaliana GN=SAMDC1 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.566e-24
Identity = 56/84 (66.67%), Postives = 64/84 (76.19%), Query Frame = 2
Query:    2 EKRLKITFSPAPIFTDPSGLGLRALTRSQLDSFLVLANCTIFSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQI 253
            EKRL++TF    IF D  GLGLRALT+SQLD  L  A CTI S LSN + DSYVLSESS FV+P K+I+KTCGTTKLL SIP +
Sbjct:   12 EKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQLDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPL 95          
BLAST of FE659309 vs. ExPASy Swiss-Prot
Match: DCAM_PEA (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.556e-24
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 2
Query:    2 EKRLKITFSPAPIFTDPSGLGLRALTRSQLDSFLVLANCTIFSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQI 253
            EKRL+I+FS   +F+DP G GLR+LT+SQLD  L  A CTI S L+N + DSYVLSESSLFV+  K+I+KTCGTTKLL SIP I
Sbjct:   12 EKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANEDVDSYVLSESSLFVYAYKLIIKTCGTTKLLLSIPPI 95          
BLAST of FE659309 vs. ExPASy Swiss-Prot
Match: DCAM_VICFA (S-adenosylmethionine decarboxylase proenzyme OS=Vicia faba GN=SAMDC PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.950e-24
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 2
Query:    2 EKRLKITFSPAPIFTDPSGLGLRALTRSQLDSFLVLANCTIFSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQI 253
            EKRL+I+FS   +F+DP G GLR+LT+SQLD  L  A CTI S L+N + DSYVLSESSLFV+  KII+KTCGTTKLL +IP I
Sbjct:   12 EKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANEDVDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPI 95          
BLAST of FE659309 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.261e-23
Identity = 55/84 (65.48%), Postives = 62/84 (73.81%), Query Frame = 2
Query:    2 EKRLKITFSPAPIFTDPSGLGLRALTRSQLDSFLVLANCTIFSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTKLLSSIPQI 253
            EKRL+I+F  +  F DP G GLRAL +SQ+D  L  A CTI   LSN   DSYVLSESSLFV+P KII+KTCGTTKLL SIP I
Sbjct:   14 EKRLEISFFESSFFADPDGKGLRALNKSQIDEILEPAECTIVDSLSNQYLDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPAI 97          
The following BLAST results are available for this feature:
BLAST of FE659309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
DCAM_MAIZE1.048e-2871.43S-adenosylmethionine decarboxylase proenzyme OS=Ze... [more]
DCAM_ORYSJ3.982e-2870.24S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_ORYSI3.982e-2870.24S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_HORCH1.673e-2669.05S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_IPONI3.155e-2570.24S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_IPOBA1.199e-2469.05S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM1_ARATH1.566e-2466.67S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_PEA4.556e-2465.48S-adenosylmethionine decarboxylase proenzyme OS=Pi... [more]
DCAM_VICFA5.950e-2465.48S-adenosylmethionine decarboxylase proenzyme OS=Vi... [more]
DCAM_CATRO2.261e-2365.48S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]

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Properties
Property NameValue
Genbank descriptionA44 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659309 ID=FE659309; Name=FE659309; organism=Citrus sinensis; type=EST; length=298bp
TGAAAAACGTTTAAAGATTACTTTCTCACCCGCTCCCATTTTCACTGACC
CATCTGGCCTCGGCCTACGGGCTCTGACTCGTTCTCAACTCGACTCATTC
CTCGTTCTCGCTAATTGCACCATCTTTTCTCAGCTCTCCAACACCGAGTT
TGACTCCTACGTTTTGTCCGAATCGAGCCTCTTCGTTTTCCCCTCGAAAA
TTATTCTCAAAACTTGTGGGACCACGAAGCTGCTCTCGTCAATCCCACAG
ATTCTCAAACTCAGCGACTCACTCTCACTTGGTGTTTCTTCTGGCAAG
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