FE659300

Overview
NameFE659300
Unique NameFE659300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length322
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7218 contig Csv1_Contig7218:461..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659300 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.897e-19
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 2
Query:   26 VSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPE------GQGLFGA---EKQQYNPWMEQM 322
            +S  P   +SN+SDW SP+GKL+WG+Q DELNKL++SASFG   NN  + +     P+    DEPDVSWVNSLVK+  PE      G  + GA   +K +   W EQM
Sbjct:  484 LSFKPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSVS----RPARDYSDEPDVSWVNSLVKENAPERVNERVGNTVNGAASRDKFKLPSWAEQM 587          
BLAST of FE659300 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.912e-18
Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 2
Query:   53 SNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGA-EKQQYNPWMEQM 322
            SNLSDW SP+GKL+WG++G+ELNK+++S SFG   NN           +    DEPDVSWVNSLVKD T   +  FG  E+ +   W EQM
Sbjct:  488 SNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNN-------NNNAARDYRDEPDVSWVNSLVKDSTVVSERSFGMNERVRIMSWAEQM 571          
BLAST of FE659300 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.438e-17
Identity = 47/81 (58.02%), Postives = 53/81 (65.43%), Query Frame = 2
Query:   11 AGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKD 253
            A  S++S   T   S LSDW SPDGKLDWGVQGDEL+KL+KSASF FR  +     T       +   EPDVSWVNSLVKD
Sbjct:  508 AARSLMSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVAT------HAAAAEPDVSWVNSLVKD 582          
BLAST of FE659300 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.870e-12
Identity = 39/87 (44.83%), Postives = 50/87 (57.47%), Query Frame = 2
Query:   59 LSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQ 319
            L+DW S DGKLDW VQGDEL KL+KS SF  R+  + +          + ++EPDVSWV  LVK+  P+       E +    WMEQ
Sbjct:  524 LNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPN----EGTGLEEPDVSWVEPLVKE--PQ-------ETRLAPVWMEQ 597          
The following BLAST results are available for this feature:
BLAST of FE659300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
C3H29_ARATH9.897e-1948.15Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H47_ARATH4.912e-1850.55Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H33_ORYSJ2.438e-1758.02Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H66_ARATH6.870e-1244.83Zinc finger CCCH domain-containing protein 66 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionA18 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659300 ID=FE659300; Name=FE659300; organism=Citrus sinensis; type=EST; length=322bp
GACCAGTCGTGCTGGTCTCAGCATGGTTTCTAACCCTCCGACTATCAGAT
CCTCTAATCTATCAGATTGGAGCTCCCCTGATGGGAAACTGGATTGGGGA
GTTCAAGGAGATGAGCTGAACAAACTTAAGAAGTCAGCTTCATTCGGGTT
TCGTAGCAACAATCTAACAACCCCAACAACAAAAGGCTTCACTCCATCAT
CATCGAATGTTGATGAGCCAGATGTGTCCTGGGTTAATTCCTTGGTGAAA
GATGTTACGCCAGAAGGACAGGGATTGTTTGGTGCGGAGAAGCAGCAATA
CAATCCATGGATGGAGCAAATG
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