FE659295

Overview
NameFE659295
Unique NameFE659295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length265
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig935 contig Csv1_Contig935:41..305. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659295 vs. ExPASy Swiss-Prot
Match: MEP1_SOYBN (Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.422e-17
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    3 AFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHALSPPNGRFHLDGDENWV 254
            AF P+ +L D  K+  A AF +W+   ++ F  T  Y TA+I+I F + +HGD  PFDGP G L HA +P +GR H D DE WV
Sbjct:  153 AFSPEPRLDDTFKSAIARAFSKWTPVVNIAFQETTSYETANIKILFASKNHGDPYPFDGPGGILGHAFAPTDGRCHFDADEYWV 236          
BLAST of FE659295 vs. ExPASy Swiss-Prot
Match: MMP13_MOUSE (Collagenase 3 OS=Mus musculus GN=Mmp13 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.785e-13
Identity = 43/81 (53.09%), Postives = 48/81 (59.26%), Query Frame = 3
Query:   33 EVKNVFATAFDRWSEATSLTFTRTDVYT-TADIRIGFFTGDHGDGEPFDGPMGTLAHALSP-PN--GRFHLDGDENWVITS 263
            EV+  F  AF  WS+ T L FTR  +Y  TADI I F T +HGD  PFDGP G LAHA  P PN  G  H D DE W  +S
Sbjct:  134 EVEKAFRKAFKVWSDVTPLNFTR--IYDGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS 212          
BLAST of FE659295 vs. ExPASy Swiss-Prot
Match: MMP13_HORSE (Collagenase 3 OS=Equus caballus GN=MMP13 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.637e-13
Identity = 43/81 (53.09%), Postives = 48/81 (59.26%), Query Frame = 3
Query:   33 EVKNVFATAFDRWSEATSLTFTRTDVYT-TADIRIGFFTGDHGDGEPFDGPMGTLAHALSP-PN--GRFHLDGDENWVITS 263
            EV+  F  AF  WS+ T L FTR  +Y  TADI I F T +HGD  PFDGP G LAHA  P PN  G  H D DE W  +S
Sbjct:  134 EVEKAFKKAFKVWSDVTPLNFTR--LYNGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS 212          
BLAST of FE659295 vs. ExPASy Swiss-Prot
Match: MMP13_RABIT (Collagenase 3 OS=Oryctolagus cuniculus GN=MMP13 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.750e-13
Identity = 42/80 (52.50%), Postives = 46/80 (57.50%), Query Frame = 3
Query:   33 EVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHALSP-PN--GRFHLDGDENWVITS 263
            EV+  F  AF  WS+ T L FTR     TADI I F T +HGD  PFDGP G LAHA  P PN  G  H D DE W  +S
Sbjct:  133 EVEKAFKKAFKVWSDVTPLNFTRIH-NGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS 211          
BLAST of FE659295 vs. ExPASy Swiss-Prot
Match: MMP13_BOVIN (Collagenase 3 OS=Bos taurus GN=MMP13 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.750e-13
Identity = 42/80 (52.50%), Postives = 46/80 (57.50%), Query Frame = 3
Query:   33 EVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHALSP-PN--GRFHLDGDENWVITS 263
            EV+  F  AF  WS+ T L FTR     TADI I F T +HGD  PFDGP G LAHA  P PN  G  H D DE W  +S
Sbjct:  133 EVEKAFRKAFKVWSDVTPLNFTRIH-NGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS 211          
BLAST of FE659295 vs. ExPASy Swiss-Prot
Match: MMP13_RAT (Collagenase 3 (Fragment) OS=Rattus norvegicus GN=Mmp13 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.204e-13
Identity = 42/80 (52.50%), Postives = 46/80 (57.50%), Query Frame = 3
Query:   33 EVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHALSP-PN--GRFHLDGDENWVITS 263
            EV+  F  AF  WS+ T L FTR     TADI I F T +HGD  PFDGP G LAHA  P PN  G  H D DE W  +S
Sbjct:  128 EVEKAFRKAFKVWSDVTPLNFTRIHD-GTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNLGGDAHFDDDETWTSSS 206          
BLAST of FE659295 vs. ExPASy Swiss-Prot
Match: MMP18_XENLA (Matrix metalloproteinase-18 OS=Xenopus laevis GN=mmp18 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.382e-12
Identity = 43/90 (47.78%), Postives = 47/90 (52.22%), Query Frame = 3
Query:    6 FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TADIRIGFFTGDHGDGEPFDGPMGTLAHALSPPN---GRFHLDGDENWVITS 263
            F PD    D V+     AF  WS+ T LTFTR  +Y   +DI I F  GDH D  PFDG  G LAHA  P N   G  H D DE W  TS
Sbjct:  121 FTPDLPQAD-VETAIQRAFKVWSDVTPLTFTR--IYNEVSDIEISFTAGDHKDNSPFDGSGGILAHAFQPGNGIGGDAHFDEDETWTKTS 207          
BLAST of FE659295 vs. ExPASy Swiss-Prot
Match: MMP8_HUMAN (Neutrophil collagenase OS=Homo sapiens GN=MMP8 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.805e-12
Identity = 38/80 (47.50%), Postives = 43/80 (53.75%), Query Frame = 3
Query:   33 EVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHALSPP---NGRFHLDGDENWVITS 263
            EV+     AF+ WS A+ L FTR      ADI I F+  DHGD  PFDGP G LAHA  P     G  H D +E W  TS
Sbjct:  128 EVERAIKDAFELWSVASPLIFTRIS-QGEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTNTS 206          
BLAST of FE659295 vs. ExPASy Swiss-Prot
Match: MMP28_HUMAN (Matrix metalloproteinase-28 OS=Homo sapiens GN=MMP28 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.021e-12
Identity = 35/85 (41.18%), Postives = 43/85 (50.59%), Query Frame = 3
Query:   12 PDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDG--EPFDGPMGTLAHALSPPNGRFHLDGDENWVIT 260
            P++     V+     AF  WS  ++L F        ADIR+ FF GDH DG    FDGP G LAHA  P  G  H D DE W ++
Sbjct:  143 PEHLPEPAVRGAVRAAFQLWSNVSALEFWEAPATGPADIRLTFFQGDHNDGLGNAFDGPGGALAHAFLPRRGEAHFDQDERWSLS 227          
BLAST of FE659295 vs. ExPASy Swiss-Prot
Match: MMP20_PIG (Matrix metalloproteinase-20 OS=Sus scrofa GN=MMP20 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.252e-12
Identity = 37/78 (47.44%), Postives = 41/78 (52.56%), Query Frame = 3
Query:   33 EVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHALSPP---NGRFHLDGDENWVI 257
            EV      A   WS A  L+F R +    ADI I F TGDHGD  PFDGP GTLAHA +P     G  H D  E W +
Sbjct:  137 EVDKAMEMALQAWSSAVPLSFVRVNA-GEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTM 213          
The following BLAST results are available for this feature:
BLAST of FE659295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
MEP1_SOYBN5.422e-1746.43Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2[more]
MMP13_MOUSE2.785e-1353.09Collagenase 3 OS=Mus musculus GN=Mmp13 PE=1 SV=1[more]
MMP13_HORSE3.637e-1353.09Collagenase 3 OS=Equus caballus GN=MMP13 PE=2 SV=1[more]
MMP13_RABIT4.750e-1352.50Collagenase 3 OS=Oryctolagus cuniculus GN=MMP13 PE... [more]
MMP13_BOVIN4.750e-1352.50Collagenase 3 OS=Bos taurus GN=MMP13 PE=2 SV=1[more]
MMP13_RAT6.204e-1352.50Collagenase 3 (Fragment) OS=Rattus norvegicus GN=M... [more]
MMP18_XENLA1.382e-1247.78Matrix metalloproteinase-18 OS=Xenopus laevis GN=m... [more]
MMP8_HUMAN1.805e-1247.50Neutrophil collagenase OS=Homo sapiens GN=MMP8 PE=... [more]
MMP28_HUMAN4.021e-1241.18Matrix metalloproteinase-28 OS=Homo sapiens GN=MMP... [more]
MMP20_PIG5.252e-1247.44Matrix metalloproteinase-20 OS=Sus scrofa GN=MMP20... [more]

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Properties
Property NameValue
Genbank descriptionA9 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659295 ID=FE659295; Name=FE659295; organism=Citrus sinensis; type=EST; length=265bp
ACGCGTTCTTGCCCGATAACCAATTGACTGACGAAGTCAAGAACGTATTT
GCGACAGCCTTTGACCGCTGGTCGGAAGCGACGTCGTTGACTTTCACTCG
GACGGACGTTTACACGACCGCCGATATCAGGATCGGGTTCTTTACTGGCG
ATCACGGTGACGGCGAGCCGTTTGATGGGCCTATGGGCACGCTGGCGCAC
GCCCTCTCGCCACCAAATGGACGGTTCCATTTAGACGGCGACGAGAACTG
GGTAATCACGAGTGG
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