FE659256

Overview
NameFE659256
Unique NameFE659256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length410
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:94..503. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FE659256 vs. ExPASy Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 9.718e-51
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = -3 
Query:   82 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 399
            MKYNPRV+SSRRKNRKAHFTA SS RR++MS+PLSTDLRQKYNVRSMP+RKDDEVQ+VRGTYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVIT
Sbjct:    1 MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVIT 106
[Close]
BLAST of FE659256 vs. ExPASy Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.333e-49
Identity = 93/106 (87.74%), Postives = 102/106 (96.23%), Query Frame = -3 
Query:   82 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 399
            MK+NPRVSSSRRKNRKAHFTAPSSVRR+LMS+PLS DLR K+NVRSMP+RKDDEVQVVRGT+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S V+IT
Sbjct:    1 MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMIT 106
[Close]
BLAST of FE659256 vs. ExPASy Swiss-Prot
Match: RL26_BRARA (60S ribosomal protein L26 OS=Brassica rapa GN=RPL26 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.207e-46
Identity = 87/106 (82.08%), Postives = 98/106 (92.45%), Query Frame = -3 
Query:   82 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 399
            MKYNPRV+SSRR+NRK HFTA SS RR+ MS+PLSTDLRQKYNVRSMP+RKDDE Q+VRGTYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+ P+KVVIT
Sbjct:    1 MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRGTYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVIT 106
[Close]
BLAST of FE659256 vs. ExPASy Swiss-Prot
Match: RL26L_HUMAN (60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.719e-39
Identity = 80/107 (74.77%), Postives = 95/107 (88.79%), Query Frame = -3 
Query:   82 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 399
            MK+NP V+S R KNRK HF APS VRR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of FE659256 vs. ExPASy Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.246e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = -3 
Query:   82 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 399
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of FE659256 vs. ExPASy Swiss-Prot
Match: RL26_MACFA (60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.246e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = -3 
Query:   82 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 399
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of FE659256 vs. ExPASy Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.246e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = -3 
Query:   82 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 399
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of FE659256 vs. ExPASy Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.246e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = -3 
Query:   82 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 399
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of FE659256 vs. ExPASy Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.933e-39
Identity = 79/107 (73.83%), Postives = 94/107 (87.85%), Query Frame = -3 
Query:   82 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 399
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVIT 107
[Close]
BLAST of FE659256 vs. ExPASy Swiss-Prot
Match: RL26_AILME (60S ribosomal protein L26 OS=Ailuropoda melanoleuca GN=RPL26 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.585e-37
Identity = 77/107 (71.96%), Postives = 92/107 (85.98%), Query Frame = -3 
Query:   82 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 399
            MK  P V+S R KNRK HF APS +RR  +S+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKSYPFVTSDRSKNRKRHFNAPSHIRRKTLSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
The following BLAST results are available for this feature:
BLAST of FE659256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL261_ARATH9.718e-5190.5760S ribosomal protein L26-1 OS=Arabidopsis thalian... [more]
RL262_ARATH5.333e-4987.7460S ribosomal protein L26-2 OS=Arabidopsis thalian... [more]
RL26_BRARA7.207e-4682.0860S ribosomal protein L26 OS=Brassica rapa GN=RPL2... [more]
RL26L_HUMAN1.719e-3974.7760S ribosomal protein L26-like 1 OS=Homo sapiens G... [more]
RL26_MOUSE2.246e-3973.8360S ribosomal protein L26 OS=Mus musculus GN=Rpl26... [more]
RL26_MACFA2.246e-3973.8360S ribosomal protein L26 OS=Macaca fascicularis G... [more]
RL26_HUMAN2.246e-3973.8360S ribosomal protein L26 OS=Homo sapiens GN=RPL26... [more]
RL26_BOVIN2.246e-3973.8360S ribosomal protein L26 OS=Bos taurus GN=RPL26 P... [more]
RL26_RAT2.933e-3973.8360S ribosomal protein L26 OS=Rattus norvegicus GN=... [more]
RL26_AILME3.585e-3771.9660S ribosomal protein L26 OS=Ailuropoda melanoleuc... [more]

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Properties
Property NameValue
Genbank description324 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659256 ID=FE659256; Name=FE659256; organism=Citrus sinensis; type=EST; length=410bp
ACCCTTCTCCTTGTCAGCGGCGGCACGTCCCTTGGCCTTGCGATCGAGCA
AAGACTTCCTGTCCTTGTCCAGACGGAGCTTGGTGATCACGACCTTTGAT
GGGTTGATTCCCACATTCACAGTGGATCCATTAACCTTCTCGCGAGTGAT
GCGCTCGATGTGAATGACCCACTTCCGGCGATACACTTGAACGACTTTGC
CCTCGCGCCCCTTGTAGGTCCCACGGACAACCTGGACCTCGTCGTCCTTG
CGCACAGGCATCGACCTTACGTTGTACTTCTGACGGAGGTCAGTGGACAG
CGGCGCGCTCATCAAGATGCGGCGCACGCTGGAAGGGGCGGTGAAGTGCG
CCTTCCGGTTCTTACGGCGAGAGGATGACACCCTGGGGTTGTACTTCATG
GTGGATGTGG
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