FE659244

Overview
NameFE659244
Unique NameFE659244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length249
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13550 contig Csv1_Contig13550:1..249. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659244 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.973e-15
Identity = 41/77 (53.25%), Postives = 45/77 (58.44%), Query Frame = -2
Query:   18 YWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXGIKMFNFQRR 248
            YWANP+AWTLYGLVASQFGD+  K  D  ETV+QFL+ YF FKHD                       IK FNFQRR
Sbjct: 1359 YWANPVAWTLYGLVASQFGDIQTKLSD-NETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434          
BLAST of FE659244 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.498e-14
Identity = 39/77 (50.65%), Postives = 43/77 (55.84%), Query Frame = -2
Query:   18 YWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXGIKMFNFQRR 248
            YW  PIAWTLYGLVASQFGD+ D   D  +TV+QFL+  F FKHD                      GIK FNFQRR
Sbjct: 1360 YWGCPIAWTLYGLVASQFGDLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436          
BLAST of FE659244 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.769e-12
Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = -2
Query:   18 WANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXGIKMFNFQRR 245
            WA P+AWTLYGLVASQ+GD+ +  ++ GE V+ +++ YF F+HD                       IK+FNFQRR
Sbjct: 1369 WACPVAWTLYGLVASQYGDITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444          
BLAST of FE659244 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.721e-12
Identity = 34/77 (44.16%), Postives = 39/77 (50.65%), Query Frame = -2
Query:   18 YWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXGIKMFNFQRR 248
            YWA P+AWTLYGLV SQFG+  D   D  ETVK FL+ +  F+HD                       IK  NFQRR
Sbjct: 1365 YWACPVAWTLYGLVVSQFGEYTDTMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441          
The following BLAST results are available for this feature:
BLAST of FE659244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PDR1_TOBAC4.973e-1553.25Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR1_NICPL5.498e-1450.65Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR7_ORYSJ1.769e-1242.11Putative pleiotropic drug resistance protein 7 OS=... [more]
TUR2_SPIPO6.721e-1244.16Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
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Properties
Property NameValue
Genbank description246 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659244 ID=FE659244; Name=FE659244; organism=Citrus sinensis; type=EST; length=249bp
ACCTATCAGAATTACTATCGCCTCTGGAAGTTAAACATCTTAATTCCTAG
GGCGAAGAGAAATCCAAATAATGCTGCAAAGACAACGAGAACGGCTGCAA
CTACTCCCAGAAAATCATGTTTGAAATCAAAATAGTCCTTAAGAAACTGT
TTCACCGTTTCACCAGTATCCATTTTCTTGTCGTCCATATCTCCGAACTG
CGAAGCAACCAGTCCATACAAGGTCCAAGCTATGGGGTTGGCCCAATAG
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