FE659239

Overview
NameFE659239
Unique NameFE659239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length368
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11400 contig Csv1_Contig11400:365..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659239 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.609e-56
Identity = 102/121 (84.30%), Postives = 116/121 (95.87%), Query Frame = 3
Query:    6 SASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHS 368
            +ASWGGIQWEK VR+SAQIHRSGG+SVLVTGA GFVG+HVSLAL+KRGDGVVGLDNFNNYYDPSLK+AR++LL++ GIFV+EGD+NDAKLLAKLFD VAFTHVMHLAAQAGVRYA++NP S
Sbjct:   64 TASWGGIQWEKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGLDNFNNYYDPSLKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQS 184          
BLAST of FE659239 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.825e-48
Identity = 91/119 (76.47%), Postives = 102/119 (85.71%), Query Frame = 3
Query:   12 SWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHS 368
            SWGG  WEK VRSSA++    G SVLVTGAAGFVGTHVS ALK+RGDGV+GLDNFN+YYDPSLK+AR+ALL   G+FV+EGDINDA LL KLF+ V FTHVMHLAAQAGVRYAM+NP S
Sbjct:   69 SWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYAMENPSS 187          
BLAST of FE659239 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.874e-46
Identity = 87/119 (73.11%), Postives = 101/119 (84.87%), Query Frame = 3
Query:   12 SWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHS 368
            SWGG  WEK VRSSA++    G+SVLVTGAAGFVGTHVS ALK+RGDGV+GLDNFN+YYD SLK++R+ALL   G+F++EGDIND  LL KLF+ V FTHVMHLAAQAGVRYAM+NP S
Sbjct:   70 SWGGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQAGVRYAMENPGS 188          
BLAST of FE659239 vs. ExPASy Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.196e-46
Identity = 87/121 (71.90%), Postives = 101/121 (83.47%), Query Frame = 3
Query:    6 SASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHS 368
            +A +GG  WEK VR SA+    GG++VLVTGA+GFVGTHVS+AL++RGDGV+GLDNFN YYDP LK+AR+ LL   G+FV+EGDINDA LL KLFD V FTHVMHLAAQAGVRYAMQNP S
Sbjct:   72 AAKYGGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGLDNFNRYYDPKLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQAGVRYAMQNPGS 192          
BLAST of FE659239 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.072e-45
Identity = 88/121 (72.73%), Postives = 104/121 (85.95%), Query Frame = 3
Query:   12 SWGGIQWEKHVRSSAQIHRS--GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHS 368
            ++GG  WEK +RSSA+I  S   G++VLVTGAAGFVGTHVS ALK+RGDGV+GLDNFN+YYDPSLK+AR+ALL   GIF++EGDIND +LL KLF  V+FTHVMHLAAQAGVRYAM+NP S
Sbjct:   73 TYGGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGLDNFNDYYDPSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAAQAGVRYAMENPSS 193          
BLAST of FE659239 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.939e-43
Identity = 82/121 (67.77%), Postives = 98/121 (80.99%), Query Frame = 3
Query:    6 SASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHS 368
            S+S GG  WEK VR S+   R  G+SVLVTGAAGFVG+H SLAL+KRGDGV+G DNFN+YYDPSLK+AR+ LL    +F++EGD+ND  LL KLFD V FTH++HLAAQAGVRYAM+NP S
Sbjct:   88 SSSIGGAAWEKRVRQSSTAKRPHGLSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQELLEKQQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQS 208          
BLAST of FE659239 vs. ExPASy Swiss-Prot
Match: YCL2_ECO11 (Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.234e-15
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 3
Query:   78 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHS 368
            M  LVTGAAGF+G HVS  L + G  VVG+DN N+YYD SLK+AR  LL   G    + D+ D + +  LF +  F  V     +  VRY+++NPH+
Sbjct:    1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHA 97          
BLAST of FE659239 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 3
Query:   81 SVLVTGAAGFVGTHVSLALKKRGDG--VVGLDNFNNYYDPSLKKARKALLNNHGIFV-IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNP 362
            ++LVTG+AGF+G H+S  L    +   V+G+DN NNYY+P LK+ R  +L N+  +  I+ D +D   L +         ++HL AQAGVRY++QNP
Sbjct:    5 NILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNP 101          
BLAST of FE659239 vs. ExPASy Swiss-Prot
Match: LPSL_RHIME (UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti GN=lspL PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   78 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALL-NNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNP 362
            M  L+TG AGF+G HV+  L   G  VVG D    YYD +LK+ R A+L  ++G   +   + D   L +  +      ++HLAAQAGVRY+++NP
Sbjct:    1 MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTAMLEDRAALDRAAELAEPEVIIHLAAQAGVRYSLENP 96          
BLAST of FE659239 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.084e-13
Identity = 37/97 (38.14%), Postives = 61/97 (62.89%), Query Frame = 3
Query:   78 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHS 368
            M +L+TG AGF+G+H++  L K+G  V+G+D+ N+YY  SLK+ R   +        +  + +   L+K+F       V++LAAQAGVRY+++NP +
Sbjct:    1 MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRT 97          
The following BLAST results are available for this feature:
BLAST of FE659239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
GAE1_ARATH2.609e-5684.30UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
GAE3_ARATH5.825e-4876.47UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]
GAE2_ARATH1.874e-4673.11UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thali... [more]
GAE5_ARATH3.196e-4671.90UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thali... [more]
GAE4_ARATH2.072e-4572.73UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GAE6_ARATH1.939e-4367.77UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
YCL2_ECO112.234e-1545.36Uncharacterized 37.6 kDa protein in cld 5'region O... [more]
Y1055_METJA7.187e-1442.27Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
LPSL_RHIME3.567e-1340.63UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti... [more]
CAPI_STAAU6.084e-1338.14Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
back to top
Properties
Property NameValue
Genbank description236 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659239 ID=FE659239; Name=FE659239; organism=Citrus sinensis; type=EST; length=368bp
ACTTTTCCGCTTCTTGGGGAGGTATCCAGTGGGAGAAACATGTCAGGAGC
TCCGCTCAGATCCATCGGTCTGGTGGGATGTCGGTGCTGGTTACCGGTGC
AGCCGGTTTCGTTGGGACCCACGTGTCTTTGGCTTTAAAGAAACGCGGAG
ACGGCGTCGTTGGACTCGACAATTTCAATAACTACTACGATCCCTCATTG
AAGAAGGCGAGGAAGGCTTTGTTGAACAACCATGGCATTTTTGTAATTGA
AGGTGATATCAATGACGCGAAATTATTAGCCAAGCTCTTTGACGCTGTGG
CTTTTACGCACGTGATGCATTTAGCGGCTCAAGCCGGTGTTAGATACGCG
ATGCAGAATCCCCACTCG
back to top