FE659238

Overview
NameFE659238
Unique NameFE659238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length201
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3977 contig Csv1_Contig3977:435..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FE659238 vs. ExPASy Swiss-Prot
Match: AB1F_ARATH (ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.511e-27
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = -2 
Query:    3 KWEQEQIASMKEHIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPP 200
            +WEQEQI+ MKE+IARFGHGSAKLARQAQSKEKTLAKMERGGLTEKV +D VLVFRF DVGKLPPP
Sbjct:  313 RWEQEQISHMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDSVLVFRFADVGKLPPP 378
[Close]
BLAST of FE659238 vs. ExPASy Swiss-Prot
Match: ABCF2_MOUSE (ATP-binding cassette sub-family F member 2 OS=Mus musculus GN=Abcf2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.370e-20
Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = -2 
Query:    3 WEQEQIASMKEHIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPP 197
            WEQ+QIA MK +IARFGHGSAKLARQAQSKEKTL KM   GLTE+VV DK L F F   GK+PPP
Sbjct:  335 WEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPP 399
[Close]
BLAST of FE659238 vs. ExPASy Swiss-Prot
Match: ABCF2_HUMAN (ATP-binding cassette sub-family F member 2 OS=Homo sapiens GN=ABCF2 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.370e-20
Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = -2 
Query:    3 WEQEQIASMKEHIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPP 197
            WEQ+QIA MK +IARFGHGSAKLARQAQSKEKTL KM   GLTE+VV DK L F F   GK+PPP
Sbjct:  330 WEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPP 394
[Close]
BLAST of FE659238 vs. ExPASy Swiss-Prot
Match: ABCF2_BOVIN (ATP-binding cassette sub-family F member 2 OS=Bos taurus GN=ABCF2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.370e-20
Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = -2 
Query:    3 WEQEQIASMKEHIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPP 197
            WEQ+QIA MK +IARFGHGSAKLARQAQSKEKTL KM   GLTE+VV DK L F F   GK+PPP
Sbjct:  332 WEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPP 396
The following BLAST results are available for this feature:
BLAST of FE659238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AB1F_ARATH1.511e-2787.88ABC transporter F family member 1 OS=Arabidopsis t... [more]
ABCF2_MOUSE1.370e-2073.85ATP-binding cassette sub-family F member 2 OS=Mus ... [more]
ABCF2_HUMAN1.370e-2073.85ATP-binding cassette sub-family F member 2 OS=Homo... [more]
ABCF2_BOVIN1.370e-2073.85ATP-binding cassette sub-family F member 2 OS=Bos ... [more]
back to top
Properties
Property NameValue
Genbank description235 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659238 ID=FE659238; Name=FE659238; organism=Citrus sinensis; type=EST; length=201bp
ACTGGTGGGGGTAGCTTTCCTACATCAACAAAACGAAAGACAAGAACCTT
GTCTTTCACAACCTTTTCTGTAAGCCCACCTCGCTCCATCTTAGCCAGTG
TTTTCTCTTTACTCTGTGCTTGGCGAGCTAGCTTCGCTGACCCATGACCA
AATCGGGCTATATGCTCTTTCATTGAAGCAATCTGCTCCTGCTCCCACTT
G
back to top