FE659237

Overview
NameFE659237
Unique NameFE659237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length280
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FE659237 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.547e-24
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = -3 
Query:    3 FKILHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 173
            +K  HLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF
Sbjct:   27 YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 83
[Close]
BLAST of FE659237 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.547e-24
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = -3 
Query:    3 FKILHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 173
            +K  HLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF
Sbjct:   27 YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 83
[Close]
BLAST of FE659237 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.547e-24
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = -3 
Query:    3 FKILHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 173
            +K  HLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF
Sbjct:   27 YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 83
[Close]
BLAST of FE659237 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.503e-22
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = -3 
Query:    3 FKILHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 173
            +K  + GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF
Sbjct:   27 YKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 83
[Close]
BLAST of FE659237 vs. ExPASy Swiss-Prot
Match: RS23_DROME (40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.957e-19
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = -3 
Query:    3 FKILHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 173
            +K  HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AF
Sbjct:   27 YKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAF 84
[Close]
BLAST of FE659237 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.957e-19
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = -3 
Query:    3 FKILHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 173
            +K  HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AF
Sbjct:   27 YKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAF 84
[Close]
BLAST of FE659237 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.556e-19
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = -3 
Query:    3 FKILHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 173
            +K  HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AF
Sbjct:   27 YKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAF 84
[Close]
BLAST of FE659237 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.556e-19
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = -3 
Query:    3 FKILHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 173
            +K  H+G  WK  PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIKNGKKI AF
Sbjct:   27 YKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAF 84
[Close]
BLAST of FE659237 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.361e-19
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = -3 
Query:    3 FKILHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 173
            +K  H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AF
Sbjct:   27 YKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAF 84
[Close]
BLAST of FE659237 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.361e-19
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = -3 
Query:    3 FKILHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 173
            +K  H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AF
Sbjct:   27 YKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAF 84
The following BLAST results are available for this feature:
BLAST of FE659237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RS23_FRAAN1.547e-2494.7440S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES1.547e-2494.7440S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH1.547e-2494.7440S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH5.503e-2289.4740S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_DROME1.957e-1977.5940S ribosomal protein S23 OS=Drosophila melanogast... [more]
RS23_DERVA1.957e-1977.5940S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_LUMRU2.556e-1977.5940S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_CAEEL2.556e-1977.5940S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_SPOFR4.361e-1974.1440S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_PAPDA4.361e-1974.1440S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]

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Properties
Property NameValue
Genbank description231 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659237 ID=FE659237; Name=FE659237; organism=Citrus sinensis; type=EST; length=280bp
ACGAAAGCTGCAATCTTCTTTCCATTCTTGATCAGCTGAACTCGAGCACA
TTTTCTGATAGCGGAGTTGGGCTGCTTTGCCTCGATACCGATTTTCTCAA
GAACAATGCCTTTTGCATGGGAAGAGCCAGCAAATGGCTTCTTCCATTCA
TTGCCAAGGTGAAGTATCTTGAATCAGGAGTTTAGGATCTTGGTTTCTCC
TTCTTCTCCTTGAAGAGGGCCAGAAGAGACACGCCTGAAACCTTGACAAC
CTTAAATCTAACACCAGGAATATCTCCCAC
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