FE659235

Overview
NameFE659235
Unique NameFE659235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length356
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4194 contig Csv1_Contig4194:161..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659235 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 197.978 bits (502), Expect = 1.273e-50
Identity = 98/117 (83.76%), Postives = 107/117 (91.45%), Query Frame = 3
Query:    3 YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGVSLKLQEEERERRMDFVPDESATKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITPPVFGRGGGR 353
            YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRG+SLKLQEEERERRMDFVPDESA K D++KVDKETL+MLA+LGMSDI+G+ +VE Q  + P VFGR  GR
Sbjct:   21 YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAVFGRPAGR 137          
BLAST of FE659235 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 193.741 bits (491), Expect = 2.401e-49
Identity = 98/118 (83.05%), Postives = 108/118 (91.53%), Query Frame = 3
Query:    3 YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGVSLKLQEEERERRMDFVPDESATKTDEIKVDKETLDMLAALGMSDISGLVE--VEPQSMITPPVFGRGGG 350
            YS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRG+SLKLQEEERERRMDFVPDESA KTD I+VDKETLDML+ALGMSD+ G+V+   EPQ++   P +GRGGG
Sbjct:   21 YSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQAAEPQAVAALPSYGRGGG 138          
BLAST of FE659235 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 3.136e-49
Identity = 99/117 (84.62%), Postives = 105/117 (89.74%), Query Frame = 3
Query:    3 YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGVSLKLQEEERERRMDFVPDESATKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITPPVFGRGGGR 353
            YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRG+SLKLQEEERERRMDFVPDESA KTDEIKVDKETL+MLA+LGMSD  G+  VEPQ  +  P+   GGGR
Sbjct:   21 YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMA-PIAAFGGGR 136          
BLAST of FE659235 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 4.095e-49
Identity = 100/119 (84.03%), Postives = 105/119 (88.24%), Query Frame = 3
Query:    3 YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGVSLKLQEEERERRMDFVPDESATKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITP-PVFGRGGGRR 356
            YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRG+SLKLQEEERERRMDFVPDESA KTDEIKVDKETL+MLA+LGMSD SG+  VEPQ  + P   FG    RR
Sbjct:   21 YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAMAPIAAFGGRAPRR 139          
BLAST of FE659235 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 4.095e-49
Identity = 99/119 (83.19%), Postives = 105/119 (88.24%), Query Frame = 3
Query:    3 YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGVSLKLQEEERERRMDFVPDESATKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITP-PVFGRGGGRR 356
            YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRG+SLKLQEEERERRMDFVPDESA KTDEIKVDKETL+MLA+LGMSD  G+  V+PQ  + P P FG G   R
Sbjct:   21 YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDPQQAMAPIPAFGGGRAPR 139          
BLAST of FE659235 vs. ExPASy Swiss-Prot
Match: RS17B_SCHPO (40S ribosomal protein S17-B OS=Schizosaccharomyces pombe GN=rps17b PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.911e-30
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = 3
Query:    3 YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGVSLKLQEEERERRMDFVPDESATKTDEIKVDKETLDMLAALGMSDISGLV 296
            Y R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRG+S KLQEEERER+  +VP+ S  + D+I VD++T DML ALG   I  +V
Sbjct:   21 YPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118          
BLAST of FE659235 vs. ExPASy Swiss-Prot
Match: RS17A_SCHPO (40S ribosomal protein S17-A OS=Schizosaccharomyces pombe GN=rps17a PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.485e-30
Identity = 61/94 (64.89%), Postives = 77/94 (81.91%), Query Frame = 3
Query:    3 YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGVSLKLQEEERERRMDFVPDESATKTDEIKVDKETLDMLAALGMSDI 284
            Y R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRG+S KLQEEERER+  +VP+ S  + D + VD++T DML +LG   I
Sbjct:   21 YPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI 114          
BLAST of FE659235 vs. ExPASy Swiss-Prot
Match: RS17_BOVIN (40S ribosomal protein S17 OS=Bos taurus GN=RPS17 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.618e-29
Identity = 61/102 (59.80%), Postives = 80/102 (78.43%), Query Frame = 3
Query:    3 YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGVSLKLQEEERERRMDFVPDESATKTDEIKVDKETLDMLAALGMSDISGLVEVEP 308
            Y+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRG+S+KLQEEERERR ++VP+ SA   + I+VD +T +ML  L    +S L   +P
Sbjct:   21 YTRLDNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of FE659235 vs. ExPASy Swiss-Prot
Match: RS17_THEPA (40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 2.113e-29
Identity = 60/92 (65.22%), Postives = 77/92 (83.70%), Query Frame = 3
Query:    3 YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGVSLKLQEEERERRMDFVPDESATKTDEIKVDKETLDMLAALGMS 278
            Y ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRG+SLKLQEEERERRMD++P++S  +   I+VD++T DML  L +S
Sbjct:   21 YGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of FE659235 vs. ExPASy Swiss-Prot
Match: RS17_THEAN (40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 2.113e-29
Identity = 60/92 (65.22%), Postives = 77/92 (83.70%), Query Frame = 3
Query:    3 YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGVSLKLQEEERERRMDFVPDESATKTDEIKVDKETLDMLAALGMS 278
            Y ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRG+SLKLQEEERERRMD++P++S  +   I+VD++T DML  L +S
Sbjct:   21 YGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
The following BLAST results are available for this feature:
BLAST of FE659235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS173_ARATH1.273e-5083.7640S ribosomal protein S17-3 OS=Arabidopsis thalian... [more]
RS17_SOLLC2.401e-4983.0540S ribosomal protein S17 OS=Solanum lycopersicum ... [more]
RS174_ARATH3.136e-4984.6240S ribosomal protein S17-4 OS=Arabidopsis thalian... [more]
RS172_ARATH4.095e-4984.0340S ribosomal protein S17-2 OS=Arabidopsis thalian... [more]
RS171_ARATH4.095e-4983.1940S ribosomal protein S17-1 OS=Arabidopsis thalian... [more]
RS17B_SCHPO1.911e-3065.3140S ribosomal protein S17-B OS=Schizosaccharomyces... [more]
RS17A_SCHPO9.485e-3064.8940S ribosomal protein S17-A OS=Schizosaccharomyces... [more]
RS17_BOVIN1.618e-2959.8040S ribosomal protein S17 OS=Bos taurus GN=RPS17 P... [more]
RS17_THEPA2.113e-2965.2240S ribosomal protein S17 OS=Theileria parva GN=RP... [more]
RS17_THEAN2.113e-2965.2240S ribosomal protein S17 OS=Theileria annulata GN... [more]

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Properties
Property NameValue
Genbank description227 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659235 ID=FE659235; Name=FE659235; organism=Citrus sinensis; type=EST; length=356bp
ACTACTCAAGAATGACACTGGACTTCCATACCAACAAGAAAATTTTGGAG
GAGGTTGCTATCATCCCCTCGAAGAGGCTGCGTAACAAAATTGCTGGGTT
CTCAACCCATTTGATGAAGAGGATTCAGAAGGGTCCAGTTCGTGGAGTCT
CCCTTAAATTGCAGGAAGAGGAGCGCGAACGCCGCATGGACTTTGTGCCT
GATGAGTCAGCTACTAAGACTGATGAAATTAAGGTTGACAAGGAAACCTT
GGATATGCTTGCTGCTCTTGGCATGTCCGACATTTCTGGGCTTGTTGAAG
TTGAGCCACAGAGCATGATTACTCCTCCAGTTTTTGGTCGGGGTGGTGGC
AGGAGG
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