FE659224

Overview
NameFE659224
Unique NameFE659224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length285
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12023 contig Csv1_Contig12023:197..481. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659224 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.025e-41
Identity = 74/94 (78.72%), Postives = 81/94 (86.17%), Query Frame = -3
Query:    2 MGGACGYGNLYSEGYGTNTAALSTALFSNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQ 283
            MGGACGYGNLYS+GYGTNTAALSTALF+NG+SCGACFEI+C ND +WC PGSI VTATNFC         AGGWCNPPQQHFDLSQPVF++IAQ
Sbjct:   44 MGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQ 137          
BLAST of FE659224 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 6.426e-39
Identity = 71/94 (75.53%), Postives = 78/94 (82.98%), Query Frame = -3
Query:    2 MGGACGYGNLYSEGYGTNTAALSTALFSNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQ 283
            MGGACGYGNLYS+GYGTNTAALSTALF+NG+SCGACFEIKC +D  WC PG+I VTATNFC         AGGWCNPP  HFDLSQPVF++IAQ
Sbjct:   47 MGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQ 140          
BLAST of FE659224 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.096e-38
Identity = 68/94 (72.34%), Postives = 79/94 (84.04%), Query Frame = -3
Query:    2 MGGACGYGNLYSEGYGTNTAALSTALFSNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQ 283
            MGGACGYGNLYS+GYGT+TAALSTALF+NG+SCG+CFEI+C ND +WC PGSI VTATNFC          GGWCNPP +HFDL+QPVF++IAQ
Sbjct:   43 MGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQ 136          
BLAST of FE659224 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.432e-38
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = -3
Query:    2 MGGACGYGNLYSEGYGTNTAALSTALFSNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQ 283
            MGGACGYGNLYS+GYGTNTAALST+LF++G SCGACFEIKCVNDP+WC PG  S+FVTATNFC          GGWCNPP+ HFDL+ PVF +IA+
Sbjct:   51 MGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAE 146          
BLAST of FE659224 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.189e-38
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = -3
Query:    2 MGGACGYGNLYSEGYGTNTAALSTALFSNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQ 283
            MGGACGYGNLYS+GYGTNTAALSTALF+NGMSCGACFE+KC NDP+WC  G  SI +TATNFC          GGWCNPP++HFDL+ PVF +IAQ
Sbjct:   48 MGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQ 143          
BLAST of FE659224 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.212e-37
Identity = 68/94 (72.34%), Postives = 77/94 (81.91%), Query Frame = -3
Query:    2 MGGACGYGNLYSEGYGTNTAALSTALFSNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQ 283
            MGGACGYGNLYS+GYGTNTAALSTALF+ G SCGACF+IKCV+DP+WC  G+I VT TNFC         AGGWCNPPQ HFDL+QP+F +IAQ
Sbjct:   46 MGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQ 139          
BLAST of FE659224 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.026e-36
Identity = 65/96 (67.71%), Postives = 77/96 (80.21%), Query Frame = -3
Query:    2 MGGACGYGNLYSEGYGTNTAALSTALFSNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQ 283
            MGGACGYGNLYS+GYG NTAALSTALF+NG+SCG+CFE+KC+NDP WC PG  SI +TATNFC          GGWCNPP++HFDL+ P+F  IA+
Sbjct:   49 MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAK 144          
BLAST of FE659224 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.750e-36
Identity = 67/94 (71.28%), Postives = 75/94 (79.79%), Query Frame = -3
Query:    8 MGGACGYGNLYSEGYGTNTAALSTALFSNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQI 283
            MGGACGYGNLYS+GYG NTAALSTALF+NG SCGACFEIKC +DPRWC PG  SI VTATNFC          GGWCNPP++HFDL+ P+F +I
Sbjct:   53 MGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKI 146          
BLAST of FE659224 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.286e-36
Identity = 65/94 (69.15%), Postives = 75/94 (79.79%), Query Frame = -3
Query:    2 MGGACGYGNLYSEGYGTNTAALSTALFSNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQ 283
            MGGACGYGNLY +GYGTNTAALSTALF+NG++CGAC+E+KC +DPRWC   +I VTATNFC          GGWCNPP QHFDL++P F QIAQ
Sbjct:   47 MGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQ 140          
BLAST of FE659224 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 2.985e-36
Identity = 65/96 (67.71%), Postives = 76/96 (79.17%), Query Frame = -3
Query:    2 MGGACGYGNLYSEGYGTNTAALSTALFSNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXAGGWCNPPQQHFDLSQPVFEQIAQ 283
            MGGACGYGNLYS+GYG NTAALSTALF+NG SCGACFE+KC +DP+WC  G  SIF+TATNFC          GGWCNPP+ HFDL+ P+F +IA+
Sbjct:   48 MGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAE 143          
The following BLAST results are available for this feature:
BLAST of FE659224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA1_ARATH4.025e-4178.72Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP15_ARATH6.426e-3975.53Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP10_ARATH1.096e-3872.34Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXP16_ARATH1.432e-3871.88Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA4_ARATH3.189e-3871.88Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP14_ARATH1.212e-3772.34Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA9_ARATH1.026e-3667.71Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA3_ARATH1.750e-3671.28Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA8_ARATH2.286e-3669.15Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA6_ARATH2.985e-3667.71Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]

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Properties
Property NameValue
Genbank description194 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659224 ID=FE659224; Name=FE659224; organism=Citrus sinensis; type=EST; length=285bp
ACTGAGCAATTTGTTCAAACACAGGCTGAGAGAGGTCAAAATGTTGCTGG
GGAGGATTGCACCAGCCACCGGCATTGTTTGGGAGAGCATTATTTGGAGG
GCAAAAATTTGTGGCAGTAACAAAAATGGAGCCCGGACGGCACCATCTTG
GGTCATTAACACACTTGATCTCAAAACAAGCCCCACAGCTCATGCCATTG
CTGAAAAGCGCAGTGCTCAGAGCTGCTGTGTTTGTCCCATATCCCTCGCT
GTATAAGTTTCCATACCCACAAGCGCCACCCATTG
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