FE659221

Overview
NameFE659221
Unique NameFE659221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length244
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12689 contig Csv1_Contig12689:655..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659221 vs. ExPASy Swiss-Prot
Match: CLPB_XANAC (Chaperone protein clpB OS=Xanthomonas axonopodis pv. citri GN=clpB PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.947e-21
Identity = 43/74 (58.11%), Postives = 62/74 (83.78%), Query Frame = -1
Query:    5 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQ 226
            FRPEF+NR+D+ +VF PLD+ QI SI R+QL  ++KR+A+R +K+ + DAA+++LGS+G+DP YGARP+KR IQ
Sbjct:  752 FRPEFINRLDDIVVFHPLDKAQIKSIARIQLQGLEKRLAERGLKLDLDDAALEVLGSVGFDPVYGARPLKRAIQ 825          
BLAST of FE659221 vs. ExPASy Swiss-Prot
Match: CLPB_XANCP (Chaperone protein clpB OS=Xanthomonas campestris pv. campestris GN=clpB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.020e-20
Identity = 42/74 (56.76%), Postives = 61/74 (82.43%), Query Frame = -1
Query:    5 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQ 226
            FRPEF+NR+D+ +VF PLD+ QI SI R+QL  ++KR+A+R +K+ + D A++LLG++G+DP YGARP+KR IQ
Sbjct:  752 FRPEFINRLDDIVVFHPLDKAQIKSIARIQLQGLEKRLAERGLKLDLDDPALELLGNVGFDPVYGARPLKRAIQ 825          
BLAST of FE659221 vs. ExPASy Swiss-Prot
Match: CLPB1_THEEB (Chaperone protein clpB 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.020e-20
Identity = 43/81 (53.09%), Postives = 63/81 (77.78%), Query Frame = -1
Query:    2 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 244
            +A R+ FRPEF+NRVDE+I+F  L +DQ+  IV+LQ+ R+Q+R++DR + + +T+ AI  L  +GYDP YGARP+KR IQ+
Sbjct:  749 EAMRAHFRPEFLNRVDEFIIFHSLRKDQLRQIVQLQVQRLQQRLSDRHITLSLTEKAIDFLAEVGYDPVYGARPLKRAIQK 829          
BLAST of FE659221 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 8.786e-20
Identity = 43/81 (53.09%), Postives = 63/81 (77.78%), Query Frame = -1
Query:    2 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 244
            +A R+ FRPEF+NRVDE I+F  L +DQ+  IVR+QL R+++R++DRK+ + ++  AI  L  +G+DP YGARP+KRVIQ+
Sbjct:  750 EALRANFRPEFLNRVDETIIFHSLRKDQLQQIVRIQLHRLEERLSDRKLSLSMSPEAIDFLVEIGFDPVYGARPLKRVIQR 830          
BLAST of FE659221 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFA (Chaperone protein clpB OS=Xylella fastidiosa GN=clpB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.499e-19
Identity = 40/80 (50.00%), Postives = 63/80 (78.75%), Query Frame = -1
Query:    5 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQ 244
            +  ++ FRPEF+NR+D+ +VF PLD+ QI  I R+QL  ++KR+A+ ++K+ + D A++LLG++G+DP YGARP+KR IQ
Sbjct:  746 EVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLQGLEKRLAESELKLDLDDRALELLGNVGFDPVYGARPLKRAIQ 825          
BLAST of FE659221 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.499e-19
Identity = 42/74 (56.76%), Postives = 62/74 (83.78%), Query Frame = -1
Query:    5 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQ 226
            FRPEF+NRVD+ I+F+ L RDQ+++IV+LQ+ R++KR+ADRK+ +++++AAI  +   GYDP YGARP+KR IQ
Sbjct:  757 FRPEFLNRVDDIIIFRNLRRDQLAAIVKLQIARLEKRLADRKITLKLSEAAIDYIVEAGYDPVYGARPLKRAIQ 830          
BLAST of FE659221 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFT (Chaperone protein clpB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.339e-19
Identity = 40/74 (54.05%), Postives = 60/74 (81.08%), Query Frame = -1
Query:    5 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQ 226
            FRPEF+NR+D+ +VF PLD+ QI  I R+QL  ++KR+A+ ++K+ + D A++LLG++G+DP YGARP+KR IQ
Sbjct:  752 FRPEFINRLDDIVVFHPLDKAQIKQIARIQLRGLEKRLAESELKLDLDDRALELLGNVGFDPVYGARPLKRAIQ 825          
BLAST of FE659221 vs. ExPASy Swiss-Prot
Match: CLPB_PSESM (Chaperone protein clpB OS=Pseudomonas syringae pv. tomato GN=clpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.339e-19
Identity = 42/81 (51.85%), Postives = 63/81 (77.78%), Query Frame = -1
Query:    2 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 244
            DA  + FRPEF+NR+DE ++F+PL RDQI+ I  +QL R++KR+A+R++ M ++  A+  L ++GYDP YGARP+KR IQ+
Sbjct:  741 DAVSTHFRPEFVNRIDEVVIFEPLARDQIAGITDIQLGRLRKRLAERELTMVLSPEALDKLIAVGYDPVYGARPLKRAIQR 821          
BLAST of FE659221 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.339e-19
Identity = 40/75 (53.33%), Postives = 63/75 (84.00%), Query Frame = -1
Query:    2 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 226
            FRPEF+NR+DE +VF+PL R+QI++IV++QL+ V+KR+A+R++ ++++  A+  L   GYDP +GARP+KRVIQ+
Sbjct:  740 FRPEFLNRLDEIVVFRPLAREQIAAIVQIQLEAVRKRLAERRITLELSQEALDFLAQRGYDPVFGARPLKRVIQR 814          
BLAST of FE659221 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.361e-19
Identity = 40/81 (49.38%), Postives = 64/81 (79.01%), Query Frame = -1
Query:    2 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQ 244
            DA  + FRPEF+NR+DE +VF+PL R+QI+ I  +QL R++KR+A+R++ ++++  A+  L ++G+DP YGARP+KR IQ+
Sbjct:  741 DAVNAHFRPEFINRIDEVVVFEPLAREQIAGIAEIQLGRLRKRLAERELSLELSQEALDKLIAVGFDPVYGARPLKRAIQR 821          
The following BLAST results are available for this feature:
BLAST of FE659221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
CLPB_XANAC7.947e-2158.11Chaperone protein clpB OS=Xanthomonas axonopodis p... [more]
CLPB_XANCP3.020e-2056.76Chaperone protein clpB OS=Xanthomonas campestris p... [more]
CLPB1_THEEB3.020e-2053.09Chaperone protein clpB 1 OS=Thermosynechococcus el... [more]
CLPB1_SYNE78.786e-2053.09Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]
CLPB_XYLFA1.499e-1950.00Chaperone protein clpB OS=Xylella fastidiosa GN=cl... [more]
CLPB_GLOVI1.499e-1956.76Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB_XYLFT3.339e-1954.05Chaperone protein clpB OS=Xylella fastidiosa (stra... [more]
CLPB_PSESM3.339e-1951.85Chaperone protein clpB OS=Pseudomonas syringae pv.... [more]
CLPB_MEIRU3.339e-1953.33Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]
CLPB_PSEAE4.361e-1949.38Chaperone protein clpB OS=Pseudomonas aeruginosa G... [more]

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Properties
Property NameValue
Genbank description187 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659221 ID=FE659221; Name=FE659221; organism=Citrus sinensis; type=EST; length=244bp
ACTGCTGAATCACCCTCTTGACCGGCCTTGCACCATAGTTGGGGTCATAC
CCAAGACTCCCAAGGAGCTGAATAGCTGCATCGGTCACTTGCATTTTCAT
CTTCCGGTCTGCAATCCTCTTCTGCACCCGATCCAACTGTAACCTCACAA
TACTGCTTATCTGGTCACGGTCCAGTGGTTGGAATACTATATACTCATCT
ACTCGGTTCATGAACTCGGGGCGGAATATTGATCTTGCAGCATC
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