FE659220

Overview
NameFE659220
Unique NameFE659220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:292..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 6.609e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct:   70 NKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.609e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct:   70 NKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.923e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct:   70 NKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 5.595e-22
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFDVGVKEIE WTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct:   70 NKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.186e-21
Identity = 45/51 (88.24%), Postives = 50/51 (98.04%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            + CGVISPR+D+GVKEIEGWTA+LLPSRQFGYIVLTTSAGIMDHEEAR+KN
Sbjct:   70 NNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS15A_STRPU (40S ribosomal protein S15a OS=Strongylocentrotus purpuratus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 6.402e-18
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFDV + E+E WT+ LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct:   70 NKCGVISPRFDVPINEMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS15A_PARLI (40S ribosomal protein S15a OS=Paracentrotus lividus GN=RPS15A PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17
Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFDV + ++E WT+ LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct:   70 NKCGVISPRFDVPINDMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS15A_DROYA (40S ribosomal protein S15a OS=Drosophila yakuba GN=RpS15Aa PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct:   70 NKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS15A_DROME (40S ribosomal protein S15Aa OS=Drosophila melanogaster GN=RpS15Aa PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct:   70 NKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS22_CANGA (40S ribosomal protein S22 OS=Candida glabrata GN=RPS22 PE=3 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.863e-17
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+
Sbjct:   70 NKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKH 120          
The following BLAST results are available for this feature:
BLAST of FE659220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RS15A_BRANA6.609e-2398.0440S ribosomal protein S15a OS=Brassica napus GN=RP... [more]
R15A1_ARATH6.609e-2398.0440S ribosomal protein S15a-1 OS=Arabidopsis thalia... [more]
R15A4_ARATH1.923e-2296.0840S ribosomal protein S15a-4 OS=Arabidopsis thalia... [more]
RS15A_DAUCA5.595e-2296.0840S ribosomal protein S15a OS=Daucus carota GN=RPS... [more]
R15A3_ARATH6.186e-2188.2440S ribosomal protein S15a-3 OS=Arabidopsis thalia... [more]
RS15A_STRPU6.402e-1878.4340S ribosomal protein S15a OS=Strongylocentrotus p... [more]
RS15A_PARLI1.426e-1776.4740S ribosomal protein S15a OS=Paracentrotus lividu... [more]
RS15A_DROYA1.426e-1778.4340S ribosomal protein S15a OS=Drosophila yakuba GN... [more]
RS15A_DROME1.426e-1778.4340S ribosomal protein S15Aa OS=Drosophila melanoga... [more]
RS22_CANGA1.863e-1776.4740S ribosomal protein S22 OS=Candida glabrata GN=R... [more]

Pages

back to top
Properties
Property NameValue
Genbank description184 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659220 ID=FE659220; Name=FE659220; organism=Citrus sinensis; type=EST; length=229bp
ACACAAAAAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAGA
AAAAAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTG
GTCCATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTG
AGGGAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCA
AAACGGGGACTGATAACCCCACATTTGCT
back to top