FE659128

Overview
NameFE659128
Unique NameFE659128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length309
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:803..1111. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659128 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.648e-21
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 1
Query:    1 PLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 171
            PLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  285 PLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of FE659128 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.139e-20
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1
Query:    1 PLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 147
            PLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  396 PLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of FE659128 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.495e-19
Identity = 35/56 (62.50%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 PLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 168
            PLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  404 PLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of FE659128 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    1 PLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 144
            P+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  415 PVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
The following BLAST results are available for this feature:
BLAST of FE659128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CYSPL_SOLLC4.648e-2173.68Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYA_ORYSJ5.139e-2079.59Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH1.495e-1962.50Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYB_ORYSJ3.811e-1568.75Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
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Properties
Property NameValue
Genbank descriptionC67 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659128 ID=FE659128; Name=FE659128; organism=Citrus sinensis; type=EST; length=309bp
CCGCTTGAGGCTGCCACCTGCTGTGATGACCACTATAGCTGCTGCCCACA
TGACTATCCCATCTGTAATGTTCGTGCTGGGACCTGCTTGATGAGCAAGG
ACAACCCATTGGGAGTGAGGGCATTACGACGCACCCCTGCTAAACCTTAC
TGGGCTCATGGAAATCAAGGTGGAAGTAGCAGTGCTTAATTATAGTTGGC
ACTGTAAGAGCAGTGGAAGGCCGAAGGGAGGATGAAAATATTCGTGCTTG
TGAATGAGTTTCTCCCCGGCCTTAGTTCATTCTACTGCATTTCATTCCAA
ACGTTAATG
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