FE659121

Overview
NameFE659121
Unique NameFE659121
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length222
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5486 contig Csv1_Contig5486:87..308. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.887e-32
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L+ASV+KCG+GKVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR + EAKRKGRHSGYGKRK
Sbjct:   10 LAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.686e-31
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L+ASV+KCG+GKVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR+MK AK KGRHSGYGKRK
Sbjct:   10 LAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 5.425e-30
Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR++  AKRKGRHSGYGKRK
Sbjct:   10 LASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.081e-25
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L+ASVL+CG+ KVWLDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR R R+  EA+RKGRH G+GKRK
Sbjct:   10 LAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19B_SCHPO (60S ribosomal protein L19-B OS=Schizosaccharomyces pombe GN=rpl19b PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.081e-25
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L+ASVLKCG+ KVW+DPNE++EIS ANSRQNIRKLVKDG +IRKP  +HSR R R+   AKR GRH+GYGKRK
Sbjct:   10 LAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19A_SCHPO (60S ribosomal protein L19-A OS=Schizosaccharomyces pombe GN=rpl19a PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 5.255e-25
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L+ASVLKCG+ KVW+DPNE++EIS ANSRQN+RKL+KDG +IRKP  +HSR R R+   AKR GRH+GYGKRK
Sbjct:   10 LAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_CAEEL (60S ribosomal protein L19 OS=Caenorhabditis elegans GN=rpl-19 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.963e-25
Identity = 51/73 (69.86%), Postives = 64/73 (87.67%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L+++VLKCG+ +VWLDPNEV+EIS ANSRQ+IR+LV DG IIRKP  +HSR RAR  +EA+RKGRH+GYGKR+
Sbjct:   10 LASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRR 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.588e-24
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG IIRKP  +HSR+R R+   A+RKGRH G GKRK
Sbjct:   10 LASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.910e-24
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRK
Sbjct:   10 LASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.910e-24
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRK
Sbjct:   10 LASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRK 82          
The following BLAST results are available for this feature:
BLAST of FE659121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL192_ARATH9.887e-3287.6760S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL191_ARATH1.686e-3187.6760S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL193_ARATH5.425e-3084.9360S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL19_DROME3.081e-2569.8660S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19B_SCHPO3.081e-2572.6060S ribosomal protein L19-B OS=Schizosaccharomyces... [more]
RL19A_SCHPO5.255e-2569.8660S ribosomal protein L19-A OS=Schizosaccharomyces... [more]
RL19_CAEEL8.963e-2569.8660S ribosomal protein L19 OS=Caenorhabditis elegan... [more]
RL19_XENLA7.588e-2469.8660S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_RAT9.910e-2468.4960S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB9.910e-2468.4960S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]

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Properties
Property NameValue
Genbank descriptionC60 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659121 ID=FE659121; Name=FE659121; organism=Citrus sinensis; type=EST; length=222bp
GCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGGCAAGGTCTGGCTTGACC
CTAATGAGGTCAACGAAATCTCCATGGCCAACTCCAGGCAGAACATTAGG
AAATTGGTGAAGGATGGTTTCATCATCAGGAAGCCAACAAAGATCCACTC
CCGTTCTCGCGCTCGCAGAATGAAGGAAGCCAAGAGGAAGGGCCGTCACT
CTGGATATGGTAAGAGAAAGGG
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