FE659116 | Citrus Genome Database

Overview


Name	FE659116
Unique Name	FE659116
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	945

Libraries


Library Name	Type
Hong Anliu sweet orange SSH library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1818	contig	Csv1_Contig1818:15..959.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FE659116 vs. ExPASy Swiss-Prot
Match: SMD1_DROME (Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster GN=snRNP69D PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.171e-34
Identity = 67/96 (69.79%), Postives = 88/96 (91.67%), Query Frame = 1

Query:   85 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 372
            MKLVRFLMKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV+L+ LS+RGNNIRY+ILPDSL LETLL+++TP+ K KK  +GR
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDSGR 96

HSP 2 Score: 128.642 bits (322), Expect = 4.983e-29
Identity = 60/80 (75.00%), Postives = 76/80 (95.00%), Query Frame = -3

Query:  623 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLL 862
            MKLVRFLMKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV+L+ LS+RGNNIRY+ILPDSL LETLL
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSLPLETLL 80

[Close]

BLAST of FE659116 vs. ExPASy Swiss-Prot
Match: SMD1_MOUSE (Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.717e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 1

Query:   85 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 366
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94

HSP 2 Score: 129.798 bits (325), Expect = 2.237e-29
Identity = 63/80 (78.75%), Postives = 73/80 (91.25%), Query Frame = -3

Query:  623 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLL 862
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLL
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLL 80

[Close]

BLAST of FE659116 vs. ExPASy Swiss-Prot
Match: SMD1_MACFA (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.717e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 1

Query:   85 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 366
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94

HSP 2 Score: 129.798 bits (325), Expect = 2.237e-29
Identity = 63/80 (78.75%), Postives = 73/80 (91.25%), Query Frame = -3

Query:  623 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLL 862
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLL
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLL 80

[Close]

BLAST of FE659116 vs. ExPASy Swiss-Prot
Match: SMD1_HUMAN (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.717e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 1

Query:   85 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 366
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94

HSP 2 Score: 129.798 bits (325), Expect = 2.237e-29
Identity = 63/80 (78.75%), Postives = 73/80 (91.25%), Query Frame = -3

Query:  623 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLL 862
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLL
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLL 80

[Close]

BLAST of FE659116 vs. ExPASy Swiss-Prot
Match: SMD1_BOVIN (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.717e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 1

Query:   85 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 366
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94

HSP 2 Score: 129.798 bits (325), Expect = 2.237e-29
Identity = 63/80 (78.75%), Postives = 73/80 (91.25%), Query Frame = -3

Query:  623 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLL 862
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLL
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLL 80

[Close]

BLAST of FE659116 vs. ExPASy Swiss-Prot
Match: SMD1_SCHPO (Probable small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe GN=smd1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.837e-32
Identity = 67/91 (73.63%), Postives = 80/91 (87.91%), Query Frame = 1

Query:   85 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 357
            MKLVRFLMKL NETVSIELKNGTIVHGTIT VD+ MNTHLK VK+T+KG+ PV ++ LS+RGNNIRYYILPDSL L+TLL++++ + K KK
Sbjct:    1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNIRYYILPDSLPLDTLLIDDSTKPKQKK 91

HSP 2 Score: 131.339 bits (329), Expect = 7.688e-30
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = -3

Query:  623 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLL 862
            MKLVRFLMKL NETVSIELKNGTIVHGTIT VD+ MNTHLK VK+T+KG+ PV ++ LS+RGNNIRYYILPDSL L+TLL
Sbjct:    1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNIRYYILPDSLPLDTLL 80

[Close]

BLAST of FE659116 vs. ExPASy Swiss-Prot
Match: SMD1_CAEEL (Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis elegans GN=snr-3 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.835e-29
Identity = 63/95 (66.32%), Postives = 77/95 (81.05%), Query Frame = 1

Query:   85 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 369
            MKLVRFLMKL++ETV+IELKNGT V GTI GVD++MNTHL+ V +T+K K PV LD LS+RGNNIRY ILPD L L+TLL+++ PR K +   AG
Sbjct:    1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPLALDTLLIDDEPRKKARAARAG 95

HSP 2 Score: 118.627 bits (296), Expect = 5.157e-26
Identity = 63/95 (66.32%), Postives = 73/95 (76.84%), Query Frame = -3

Query:  602 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLL--------RAAARAG 862
            MKLVRFLMKL++ETV+IELKNGT V GTI GVD++MNTHL+ V +T+K K PV LD LS+RGNNIRY ILPD L L+TLL          AARAG
Sbjct:    1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPLALDTLLIDDEPRKKARAARAG 95

[Close]

BLAST of FE659116 vs. ExPASy Swiss-Prot
Match: SMD1_YEAST (Small nuclear ribonucleoprotein Sm D1 OS=Saccharomyces cerevisiae GN=SMD1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.724e-14
Identity = 52/130 (40.00%), Postives = 67/130 (51.54%), Query Frame = -3

Query:  554 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK---------------------GKNP------VNLDHLSVRGNNIRYYILPDSLNLETLLRAAARAGTIIRKQKQRSDASNSR 862
            MKLV FL KL NE V+IELKNGT V GT+  V   MN  L  VKLTL                      G+ P       +L ++++RGN IR  ILPDSLNL++LL    +  ++ R  +  +D S  R
Sbjct:    1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMASLYLTGGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQKQLNSLRRSGQIANDPSKKR 130

HSP 2 Score: 78.1814 bits (191), Expect = 7.763e-14
Identity = 49/110 (44.55%), Postives = 61/110 (55.45%), Query Frame = 1

Query:   85 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK---------------------GKNP------VNLDHLSVRGNNIRYYILPDSLNLETLLVEE 333
            MKLV FL KL NE V+IELKNGT V GT+  V   MN  L  VKLTL                      G+ P       +L ++++RGN IR  ILPDSLNL++LLV++
Sbjct:    1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMASLYLTGGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQ 110

The following BLAST results are available for this feature:

BLAST of FE659116 vs. ExPASy Swiss-Prot

BLAST of FE659116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8


Match Name	E-value	Identity	Description
SMD1_DROME	5.171e-34	69.79	Probable small nuclear ribonucleoprotein Sm D1 OS=...	[more]
SMD1_MOUSE	5.717e-33	74.47	Small nuclear ribonucleoprotein Sm D1 OS=Mus muscu...	[more]
SMD1_MACFA	5.717e-33	74.47	Small nuclear ribonucleoprotein Sm D1 OS=Macaca fa...	[more]
SMD1_HUMAN	5.717e-33	74.47	Small nuclear ribonucleoprotein Sm D1 OS=Homo sapi...	[more]
SMD1_BOVIN	5.717e-33	74.47	Small nuclear ribonucleoprotein Sm D1 OS=Bos tauru...	[more]
SMD1_SCHPO	2.837e-32	73.63	Probable small nuclear ribonucleoprotein Sm D1 OS=...	[more]
SMD1_CAEEL	3.835e-29	66.32	Probable small nuclear ribonucleoprotein Sm D1 OS=...	[more]
SMD1_YEAST	7.724e-14	40.00	Small nuclear ribonucleoprotein Sm D1 OS=Saccharom...	[more]

Properties


Property Name	Value
Genbank description	C55 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FE659116 ID=FE659116; Name=FE659116; organism=Citrus sinensis; type=EST; length=945bp
ACAACGTTCCCGCTTCCTAGTAGCAGAGAATCTTCTTCTCTCCGCTTTTG
CTTCAAAGCCCTAGCTTTCGTCTTGCTCACCAAAATGAAGCTCGTCAGGT
TCTTGATGAAGTTGAACAATGAGACCGTGTCGATTGAACTGAAGAACGGA
ACCATTGTTCACGGAACCATCACAGGTGTGGATATCAGTATGAACACACA
TTTGAAAACAGTGAAACTTACGCTGAAGGGGAAAAATCCAGTGAACTTGG
ATCACCTAAGTGTGAGGGGTAACAATATCCGTTATTATATCCTTCCTGAC
AGCTTGAATCTTGAAACATTGCTGGTTGAAGAGACACCTAGGGTCAAGCC
AAAGAAGCCGACTGCTGGGAGGCCGGTGGGACGTGGTCGGGGCCGTGGAC
GTGGTCGCGGGCGTGGTCGTGGTCGTTAGATATGTTGCACTGGTTATAAT
TTTTGGAGCACCTGGTCATGTAAACATCTTTGTTGTAGGAGTGTGTGGGG
ACATGGAAAGGAGTGATGTTATCTTTTAATATTGTTCCACCAGGGTGACT
TGATCTAGAATTCGAAGCATCACTCCTTTGTTTTTGCTTTCTTATAATGG
TACCTGCCCGGGCGGCCGCTCGAAGCAATGTTTCAAGATTCAAGCTGTCA
GGAAGGATATAATAACGGATATTGTTACCCCTCACACTTAGGTGATCCAA
GTTCACTGGATTTTTCCCCTTCAGCGTAAGTTTCACTGTTTTCAAATGTG
TGTTCATACTGATATCCACACCTGTGATGGTTCCGTGAACAATGGTTCCG
TTCTTCAGTTCAATCGACACGGTCTCATTGTTCAACTTCATCAAGAACCT
GACGAGCTTCATTTTGGTGAGCAAGACGAAAGCTAGGGCTTTGAAGCAAA
AGCGGAGAGAAGAAGATTCTCTGCTACTAGGAAGCGGGAACGTTG