FE659112

Overview
NameFE659112
Unique NameFE659112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length320
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12302 contig Csv1_Contig12302:871..1190. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FE659112 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.170e-38
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 2 
Query:    2 AMRAGEAANDDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYLAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYDGLNHLKIVQMILYE 319
            A++AGE   DDLLG+L+E++ +EI++ GN K+ G S+NDVIEECKLFY AGQETT VLL WT +LLSKH +WQERAR+EVLQ FG NKP+++ LNHLK V MILYE
Sbjct:  283 ALKAGEPGEDDLLGVLLESNIQEIQKQGNKKDGGMSINDVIEECKLFYFAGQETTGVLLTWTTILLSKHPEWQERAREEVLQAFGKNKPEFERLNHLKYVSMILYE 388
The following BLAST results are available for this feature:
BLAST of FE659112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C72A1_CATRO3.170e-3866.98Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
back to top
Properties
Property NameValue
Genbank descriptionC51 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659112 ID=FE659112; Name=FE659112; organism=Citrus sinensis; type=EST; length=320bp
GGCAATGAGAGCAGGGGAAGCTGCGAATGATGACTTGTTAGGCATACTGA
TGGAAACCAGTTTTAGAGAGATTGAAGAACATGGAAATAACAAAAATGTT
GGGTTCAGCATGAACGATGTGATCGAAGAGTGTAAGCTATTTTACCTTGC
CGGCCAAGAGACTACCTCTGTTTTGCTTAATTGGACGATGGTCTTATTGA
GCAAGCATCAAGATTGGCAAGAACGTGCAAGGCAAGAGGTTTTGCAAGTG
TTTGGCAATAATAAGCCCGACTATGATGGATTGAATCACCTCAAAATTGT
CCAGATGATACTTTATGAGG
back to top