FE659110

Overview
NameFE659110
Unique NameFE659110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4591 contig Csv1_Contig4591:455..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659110 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.014e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = -1
Query:  264 LLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 404
            LLSIQALLSAPNPDDPLSENIAKHWK+NEAEAVETAKEWTRLYASGA
Sbjct:  107 LLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASGA 153          
BLAST of FE659110 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.942e-20
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = -1
Query:  264 LLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 404
            LLSIQALLSAPNPDDPLSENIAKHWK+NEAEAV+TAKEWTRLYASGA
Sbjct:  107 LLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASGA 153          
BLAST of FE659110 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.930e-14
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = -1
Query:  273 LLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 404
            LLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:  105 LLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of FE659110 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.930e-14
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = -1
Query:  273 LLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 404
            LLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:  105 LLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of FE659110 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.930e-14
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = -1
Query:  273 LLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 404
            LLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:  105 LLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of FE659110 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.930e-14
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = -1
Query:  273 LLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 404
            LLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:  105 LLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of FE659110 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.930e-14
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = -1
Query:  273 LLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 404
            LLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:  105 LLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of FE659110 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.291e-14
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = -1
Query:  273 LLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 404
            LLSIQALLSAPNPDDPL+ ++A+HWKTNE EA+  A+EWTRLYA
Sbjct:  105 LLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
BLAST of FE659110 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.614e-14
Identity = 33/44 (75.00%), Postives = 41/44 (93.18%), Query Frame = -1
Query:  273 LLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 404
            LLSIQALLSAPNPDDPL+ ++A+ WK+NEA+A+ETA+ WTRLYA
Sbjct:  105 LLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYA 148          
BLAST of FE659110 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.251e-13
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = -1
Query:  273 LLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 404
            LLSIQALL+APNPDDPL+ ++ + WKTNEA+A+ETA+ WTRLYA
Sbjct:  106 LLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYA 149          
The following BLAST results are available for this feature:
BLAST of FE659110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
UBC36_ARATH4.014e-2097.87Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH8.942e-2095.74Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_PONAB1.930e-1477.27Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE1.930e-1477.27Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_MACFA1.930e-1477.27Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2N_HUMAN1.930e-1477.27Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN1.930e-1477.27Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2N_DICDI3.291e-1477.27Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2N_RAT5.614e-1475.00Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UE2NL_HUMAN1.251e-1372.73Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]

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Properties
Property NameValue
Genbank descriptionC49 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659110 ID=FE659110; Name=FE659110; organism=Citrus sinensis; type=EST; length=404bp
ACAAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAGTTGAGAAACAAT
GTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCCACAAGAAGAA
AATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATGTCAAACTCCG
AATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATTTTAAACAGAC
AGTGAATAGCATACATTGCACAATTGTTATTTGAATGAAGTGATATTTTC
CACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCATTCCTTCGCT
GTTTCAACTGCTTCGGCCTCATTTGTTTTCCAGTGTTTGGCAATGTTCTC
GGAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCTTGAATGCTCA
AAAG
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