FE659109

Overview
NameFE659109
Unique NameFE659109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length323
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3815 contig Csv1_Contig3815:675..997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659109 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.022e-23
Identity = 58/107 (54.21%), Postives = 70/107 (65.42%), Query Frame = -2
Query:    2 SLKVLEHEIFTVTPIKVLSPGFSFAPLGLVNMFNAGGAIEGLKYVVEGGAKLTEIDDGYGGDQRAENCSNELVGKVSMEVKGCGKFGAYASAKPRRCTVDSNEVEFE 322
            SLK+ EHEIFTV+PI  L  G SFAP+GLVNM+N+GGAIEGL+Y  E   K+                      KV MEVKGCGKFG+Y+S KP+RC V+SNE+ FE
Sbjct:  639 SLKIREHEIFTVSPISHLVDGVSFAPIGLVNMYNSGGAIEGLRYEAE---KM----------------------KVVMEVKGCGKFGSYSSVKPKRCVVESNEIAFE 720          
BLAST of FE659109 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.158e-17
Identity = 43/108 (39.81%), Postives = 71/108 (65.74%), Query Frame = -2
Query:    5 SLKVLEHEIFTVTPIKVLSPGFSFAPLGLVNMFNAGGAIEG--LKYVVEGGAKLTEIDDGYGGDQRAENCSNELVGKVSMEVKGCGKFGAYASAKPRRCTVDSNEVEF 322
            +LKVLE+E+F ++P+K ++   SFAP+GLV+MFN+ GAIE   + +V +   +  + +        ++N S   +  VS+ V+GCG+FGAY+S +P +C V+S E +F
Sbjct:  639 TLKVLEYELFHISPLKEITENISFAPIGLVDMFNSSGAIESIDINHVTDKNPEFFDGEISSASPALSDNRSPTAL--VSVSVRGCGRFGAYSSQRPLKCAVESTETDF 744          
BLAST of FE659109 vs. ExPASy Swiss-Prot
Match: RFS1_ARATH (Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.172e-11
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = -2
Query:    5 EHEIFTVTPIKVLSPGFSFAPLGLVNMFNAGGAIEGLKYVVEGGAKLTEIDDGYGGDQRAENCSNELVGKVSMEVKGCGKFGAYASA-KPRRCTVDSNEVEF 307
            E+E+FTV P+K  S G  FAP+GL+ MFN+GGAI  L+Y  EG   +                       V M+++G G  G Y+S  +PR  TVDS++VE+
Sbjct:  648 EYEVFTVVPVKEFSDGSKFAPVGLMEMFNSGGAIVSLRYDDEGTKFV-----------------------VRMKLRGSGLVGVYSSVRRPRSVTVDSDDVEY 726          
The following BLAST results are available for this feature:
BLAST of FE659109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RFS6_ARATH1.022e-2354.21Probable galactinol--sucrose galactosyltransferase... [more]
RFS2_ARATH4.158e-1739.81Probable galactinol--sucrose galactosyltransferase... [more]
RFS1_ARATH1.172e-1139.22Probable galactinol--sucrose galactosyltransferase... [more]
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Properties
Property NameValue
Genbank descriptionC48 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659109 ID=FE659109; Name=FE659109; organism=Citrus sinensis; type=EST; length=323bp
ACTCAAATTCGACCTCATTTGAATCCACAGTGCACCTTCTTGGCTTAGCT
GATGCATAAGCACCGAACTTGCCACAACCTTTAACCTCCATGCTGACCTT
CCCCACCAATTCATTGCTACAATTCTCCGCTCTCTGATCACCTCCATACC
CATCATCAATCTCCGTTAACTTAGCGCCGCCTTCAACTACATATTTGAGC
CCCTCAATAGCACCACCAGCATTGAACATGTTGACGAGCCCCAAGGGCGC
AAAGCTAAAGCCGGGGGATAAAACCTTAATGGGTGTGACAGTGAAGATTT
CATGTTCAAGGACTTTAAGGGAC
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