EY720903

Overview
NameEY720903
Unique NameEY720903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720903 vs. ExPASy Swiss-Prot
Match: PSD13_BOVIN (26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.929e-20
Identity = 55/156 (35.26%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  133 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGESTLDSMTDIDPSVYANYY 600
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+S+LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED E  L ++  +  SV++ +Y
Sbjct:    7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALSFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLSNLPGV-TSVHSRFY 156          
BLAST of EY720903 vs. ExPASy Swiss-Prot
Match: PSD13_RAT (26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.519e-20
Identity = 54/156 (34.62%), Postives = 90/156 (57.69%), Query Frame = 1
Query:  133 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGESTLDSMTDIDPSVYANYY 600
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED E  L+++  +  SV++ +Y
Sbjct:    7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQATKETIEDVEEMLNNLPGV-TSVHSRFY 156          
BLAST of EY720903 vs. ExPASy Swiss-Prot
Match: PSD13_MOUSE (26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.519e-20
Identity = 54/156 (34.62%), Postives = 90/156 (57.69%), Query Frame = 1
Query:  133 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGESTLDSMTDIDPSVYANYY 600
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED E  L+++  +  SV++ +Y
Sbjct:    7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLEVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQATKETIEDVEEMLNNLPGV-TSVHSRFY 156          
BLAST of EY720903 vs. ExPASy Swiss-Prot
Match: PSD13_DICDI (26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.775e-20
Identity = 49/161 (30.43%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  127 LQYLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQG---DRKECKKLLEDGESTLDSMTDIDPSVYANYY 600
            L+YLE L+   P+L +  N + D Y+ KLWHQLT ++E  +          L   Y NFI DFE K+  L L    + V+RQ+   ++   ++E + +K++     + +   +     IA   L  G     ++CKK LE  +  L  +T +D  VY+++Y
Sbjct:    7 LEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFNFYTNFIRDFENKLRPLSLVEICIAVARQFDTDESR-KFIETISQKVK-----KDKSAYILTLSYIANMNLRSGVAEQLQDCKKTLELAKEELQGVTGLDTIVYSSFY 161          

HSP 2 Score: 33.4982 bits (75), Expect = 2.775e-20
Identity = 15/33 (45.45%), Postives = 21/33 (63.64%), Query Frame = 2
Query:  605 VSSHYHKFHPECAEFYKCALLYLAYTSVGVSSQ 703
            VS+ YH    + +EFYK AL+YL+Y  +   SQ
Sbjct:  163 VSTDYHMAKSQASEFYKNALMYLSYCKLETISQ 195          
BLAST of EY720903 vs. ExPASy Swiss-Prot
Match: PSD13_HUMAN (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.612e-20
Identity = 54/156 (34.62%), Postives = 90/156 (57.69%), Query Frame = 1
Query:  133 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGESTLDSMTDIDPSVYANYY 600
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED E  L+++  +  SV++ +Y
Sbjct:    7 FLQQSQSSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLNNLPGV-TSVHSRFY 156          
BLAST of EY720903 vs. ExPASy Swiss-Prot
Match: PSD13_CHICK (26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.633e-19
Identity = 53/156 (33.97%), Postives = 90/156 (57.69%), Query Frame = 1
Query:  133 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGESTLDSMTDIDPSVYANYY 600
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +E+ E  L+++  +  SV++ +Y
Sbjct:    7 FLQQSQSAGPGQAAVWHRLEELYNKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPTVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQVTKETIEEVEEMLNNLPGV-TSVHSRFY 156          
The following BLAST results are available for this feature:
BLAST of EY720903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSD13_BOVIN1.929e-2035.2626S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_RAT2.519e-2034.6226S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_MOUSE2.519e-2034.6226S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_DICDI2.775e-2030.4326S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_HUMAN5.612e-2034.6226S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_CHICK1.633e-1933.9726S proteasome non-ATPase regulatory subunit 13 OS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-015-G12-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720903 ID=EY720903; Name=EY720903; organism=Citrus sinensis; type=EST; length=801bp
AAAAAAGGCACACGAGAAACTGAGAGAGAAGGGTTTTTGAGATTGCTCTG
ATATTATAATAAATAAACAGAGAAAAAAAATCATATTTTTCTCTAAATCT
TGCACTGTCGCTTCGCCATGGCAGCTCTTCAGTACTTGGAATCTTTGCGA
AACGACCATCCGGAGCTGGGCGAGTGGTACAATGCTTTGGCAGATCTGTA
CCAGAAGAAGCTGTGGCACCAGCTCACCCTCAAGCTCGAACAGTTCGTCG
CTCACGCCGTCTTTCAGGCTGGTGATGCTCTGATTCAGTTGTACCACAAC
TTCATAACTGATTTTGAGACAAAGATCAATCTTCTCAAGCTTGCACATTT
TGCTGTTATAGTTTCTCGGCAGTATCCTGAGAAGCAAGCTGCAATTAGTT
ATCTTGAGGGTGTGATTGAAAAACTCCGAGCAACTAATGAGCAGCGTAAA
GAGGAGCCAATCCTTTACATTAAGATGCAAATAGCCATGTTCAAACTTGA
GCAAGGAGATAGAAAGGAGTGCAAAAAACTTCTCGAAGATGGAGAGAGTA
CACTTGACAGCATGACTGACATTGATCCATCTGTATATGCCAACTATTAT
TGGGGTGTCATCTCACTACCATAAATTTCACCCGGAATGTGCAGAGTTCT
ACAAATGTGCTCTTCTTTATCTGGCATACACATCTGTGGGAGTCTCCTCT
CAGATTCATTCAAGCTGGATGTGGCATTTGATCTCTCCCTTCCTGCCTGC
TGGGGAAATACATCTTACAATTGGGGGAACTGGTCCCACACCCTATGATG
A
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