EY720885 | Citrus Genome Database

Overview


Name	EY720885
Unique Name	EY720885
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	855

Libraries


Library Name	Type
Sweet orange fruit, development stadium (4 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY720885 vs. ExPASy Swiss-Prot
Match: CSK22_ARATH (Casein kinase II subunit alpha-2 OS=Arabidopsis thaliana GN=CKA2 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.766e-28
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 3

Query:   12 KILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKVM 197
            KILQNLCGGPN+VKLLD+VRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLK +
Sbjct:   78 KILQNLCGGPNIVKLLDVVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKAL 139

HSP 2 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 43/105 (40.95%), Postives = 52/105 (49.52%), Query Frame = 2

Query:  494 LQALDYCHSQGIMHXECQPSHVMIDHELR*TSLIDWGSXLNLPSLXRSIKCRVASRYFQGPXXXXXXXXXXXXXNMLKLWLHVCRNDIPEGTILLCHDNMIHLVK 808
            L+ALD+CHSQGIMH + +P +VMIDHELR   LIDWG         +    RVASRYF+GP             +M  L          +      HDN   LVK
Sbjct:  136 LKALDFCHSQGIMHRDVKPHNVMIDHELRKLRLIDWG-LAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVK 239

[Close]

BLAST of EY720885 vs. ExPASy Swiss-Prot
Match: CSK21_ARATH (Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.766e-28
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 3

Query:   12 KILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKVM 197
            KILQNLCGGPN+VKLLD+VRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLK +
Sbjct:   78 KILQNLCGGPNIVKLLDVVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKAL 139

HSP 2 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 43/105 (40.95%), Postives = 52/105 (49.52%), Query Frame = 2

Query:  494 LQALDYCHSQGIMHXECQPSHVMIDHELR*TSLIDWGSXLNLPSLXRSIKCRVASRYFQGPXXXXXXXXXXXXXNMLKLWLHVCRNDIPEGTILLCHDNMIHLVK 808
            L+ALD+CHSQGIMH + +P +VMIDHELR   LIDWG         +    RVASRYF+GP             +M  L          +      HDN   LVK
Sbjct:  136 LKALDFCHSQGIMHRDVKPHNVMIDHELRKLRLIDWG-LAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVK 239

[Close]

BLAST of EY720885 vs. ExPASy Swiss-Prot
Match: CSK2A_MAIZE (Casein kinase II subunit alpha OS=Zea mays GN=ACK2 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.719e-28
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 3

Query:   12 KILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKVM 197
            KILQNLCGGPN+VKLLDIVRDQHSKTPSLIFEYVN+TDFKVLYPTLTDYDIRYYIYELLK +
Sbjct:   78 KILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKAL 139

HSP 2 Score: 73.1738 bits (178), Expect = 2.128e-12
Identity = 44/105 (41.90%), Postives = 52/105 (49.52%), Query Frame = 2

Query:  494 LQALDYCHSQGIMHXECQPSHVMIDHELR*TSLIDWGSXLNLPSLXRSIKCRVASRYFQGPXXXXXXXXXXXXXNMLKLWLHVCRNDIPEGTILLCHDNMIHLVK 808
            L+ALDYCHSQGIMH + +P +VMIDHELR   LIDWG         +    RVASRYF+GP             +M  L          +      HDN   LVK
Sbjct:  136 LKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWG-LAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVK 239

[Close]

BLAST of EY720885 vs. ExPASy Swiss-Prot
Match: CSK23_ARATH (Probable casein kinase II subunit alpha OS=Arabidopsis thaliana GN=At2g23080 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.589e-26
Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 3

Query:   12 KILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKVM 197
            KILQNLCGGPN+VKL DIVRD+HSKTPSL+FE+VNS DFKVLYPTLTDYDIRYYIYELLK +
Sbjct:   78 KILQNLCGGPNIVKLYDIVRDEHSKTPSLVFEFVNSVDFKVLYPTLTDYDIRYYIYELLKAL 139

HSP 2 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 42/105 (40.00%), Postives = 52/105 (49.52%), Query Frame = 2

Query:  494 LQALDYCHSQGIMHXECQPSHVMIDHELR*TSLIDWGSXLNLPSLXRSIKCRVASRYFQGPXXXXXXXXXXXXXNMLKLWLHVCRNDIPEGTILLCHDNMIHLVK 808
            L+ALD+CHSQGIMH + +P +VMIDH+LR   LIDWG         +    RVASRYF+GP             +M  L          +      HDN   LVK
Sbjct:  136 LKALDFCHSQGIMHRDVKPHNVMIDHQLRKLRLIDWG-LAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVK 239

[Close]

BLAST of EY720885 vs. ExPASy Swiss-Prot
Match: CSK2A_THEAN (Casein kinase II subunit alpha OS=Theileria annulata GN=TA10630 PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.587e-21
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 3

Query:   12 KILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKVMS 200
            KILQNL GGPN++KLLDIV+D  S+TPSLIFE+VN+TDFK LYPTLT  DI+YYIY+LLK M+
Sbjct:   99 KILQNLRGGPNIIKLLDIVKDPQSRTPSLIFEHVNNTDFKTLYPTLTIQDIKYYIYQLLKAMN 161

HSP 2 Score: 64.3142 bits (155), Expect = 1.449e-13
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 2

Query:  494 LQALDYCHSQGIMHXECQPSHVMIDHELR*TSLIDWG-SXLNLPSLXRSIKCRVASRYFQGP 676
            L+A++YCHSQGIMH + +P +VMIDHE +   LIDWG +    P    S+  RVA+RY++GP
Sbjct:  157 LKAMNYCHSQGIMHRDIKPHNVMIDHEKKILRLIDWGLAEFYHPEQEYSV--RVATRYYKGP 216

HSP 3 Score: 30.8018 bits (68), Expect = 1.449e-13
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  726 SFGCMFAGMIFRKGPSFY 779
            S GCM AG+IF+K P FY
Sbjct:  233 SIGCMLAGIIFKKEPFFY 250

[Close]

BLAST of EY720885 vs. ExPASy Swiss-Prot
Match: CSK2A_SCHPO (Casein kinase II subunit alpha OS=Schizosaccharomyces pombe GN=cka1 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.587e-21
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 3

Query:   12 KILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKVM 197
            KILQNL GGPN++ LLDIVRD  SKTPSLIFE+V++ DF+ LYPTL+DYDIRYY YELLK +
Sbjct:   87 KILQNLAGGPNIISLLDIVRDPESKTPSLIFEFVDNIDFRTLYPTLSDYDIRYYSYELLKAL 148

HSP 2 Score: 65.0846 bits (157), Expect = 7.316e-12
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 2

Query:  494 LQALDYCHSQGIMHXECQPSHVMIDHELR*TSLIDWGSXLNLPSLXRSIKCRVASRYFQGP 676
            L+ALD+CHS+GIMH + +P +VMIDH+ R   LIDWG              RVASRYF+GP
Sbjct:  145 LKALDFCHSRGIMHRDVKPHNVMIDHKKRKLRLIDWG-LAEFYHAGMEYNVRVASRYFKGP 204

HSP 3 Score: 24.2534 bits (51), Expect = 7.316e-12
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  726 SFGCMFAGMIFRKGPSF 776
            SFG MFA +IF+K   F
Sbjct:  221 SFGVMFAALIFKKDTFF 237

[Close]

BLAST of EY720885 vs. ExPASy Swiss-Prot
Match: CSK2A_NEUCR (Casein kinase II subunit alpha OS=Neurospora crassa GN=cka PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.245e-20
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 3

Query:   12 KILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKVM 197
            KILQNL GGPN+V LLD+VRD  SKTPSLIFEYVN+T+F+ LYP   D+D+RYYI+ELLK +
Sbjct:   76 KILQNLAGGPNIVALLDVVRDSQSKTPSLIFEYVNNTEFRTLYPRFNDFDVRYYIFELLKAL 137

HSP 2 Score: 66.2402 bits (160), Expect = 2.447e-13
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 2

Query:  494 LQALDYCHSQGIMHXECQPSHVMIDHELR*TSLIDWG-SXLNLPSLXRSIKCRVASRYFQGP 676
            L+ALD+CHS+GIMH + +P +VMIDHE R   LIDWG +    P    ++  RVASRYF+GP
Sbjct:  134 LKALDFCHSKGIMHRDVKPHNVMIDHENRKLRLIDWGLAEFYHPGTEYNV--RVASRYFKGP 193

HSP 3 Score: 28.1054 bits (61), Expect = 2.447e-13
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 3

Query:  726 SFGCMFAGMIFRKGPSFY 779
            S G MFA MIFRK P F+
Sbjct:  210 SLGAMFASMIFRKEPFFH 227

[Close]

BLAST of EY720885 vs. ExPASy Swiss-Prot
Match: CSK2A_DICDI (Casein kinase II subunit alpha OS=Dictyostelium discoideum GN=casK PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.245e-20
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 3

Query:   12 KILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKVM 197
            KILQNLCGGPN++ L D+VRD  SKTPSLIFEY+N+TDFK L PTLTD+D+RYYI ELL  +
Sbjct:   91 KILQNLCGGPNIITLYDVVRDPQSKTPSLIFEYINNTDFKHLSPTLTDFDVRYYIRELLHAL 152

[Close]

BLAST of EY720885 vs. ExPASy Swiss-Prot
Match: CSK2A_THEPA (Casein kinase II subunit alpha OS=Theileria parva GN=TP04_0659 PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.626e-20
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 3

Query:   12 KILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKVMS 200
            KILQNL GGPN++KLLDIV+D  S+TPSLIFE+VN+TDFK LYPTL+  DI+YYIY+LLK M+
Sbjct:   99 KILQNLRGGPNIIKLLDIVKDPQSRTPSLIFEHVNNTDFKTLYPTLSIQDIKYYIYQLLKAMN 161

HSP 2 Score: 64.3142 bits (155), Expect = 1.449e-13
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 2

Query:  494 LQALDYCHSQGIMHXECQPSHVMIDHELR*TSLIDWG-SXLNLPSLXRSIKCRVASRYFQGP 676
            L+A++YCHSQGIMH + +P +VMIDHE +   LIDWG +    P    S+  RVA+RY++GP
Sbjct:  157 LKAMNYCHSQGIMHRDIKPHNVMIDHEKKILRLIDWGLAEFYHPEQEYSV--RVATRYYKGP 216

HSP 3 Score: 30.8018 bits (68), Expect = 1.449e-13
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  726 SFGCMFAGMIFRKGPSFY 779
            S GCM AG+IF+K P FY
Sbjct:  233 SIGCMLAGIIFKKEPFFY 250

[Close]

BLAST of EY720885 vs. ExPASy Swiss-Prot
Match: CSK21_XENLA (Casein kinase II subunit alpha OS=Xenopus laevis GN=csnk2a1 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.521e-18
Identity = 41/62 (66.13%), Postives = 54/62 (87.10%), Query Frame = 3

Query:   12 KILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKVM 197
            KIL+NL GGPN++ L DIV+D  S+TP+L+FE+VN+TDFK LY TLTDYDIR+Y+YE+LK +
Sbjct:   83 KILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKAL 144

HSP 2 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 41/105 (39.05%), Postives = 51/105 (48.57%), Query Frame = 2

Query:  494 LQALDYCHSQGIMHXECQPSHVMIDHELR*TSLIDWGSXLNLPSLXRSIKCRVASRYFQGPXXXXXXXXXXXXXNMLKLWLHVCRNDIPEGTILLCHDNMIHLVK 808
            L+ALDYCHS GIMH + +P +VMIDHE R   LIDWG         +    RVASRYF+GP             +M  L   +      +      HDN   LV+
Sbjct:  141 LKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWG-LAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVR 244

The following BLAST results are available for this feature:

BLAST of EY720885 vs. ExPASy Swiss-Prot

BLAST of EY720885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26


Match Name	E-value	Identity	Description
CSK22_ARATH	2.766e-28	93.55	Casein kinase II subunit alpha-2 OS=Arabidopsis th...	[more]
CSK21_ARATH	2.766e-28	93.55	Casein kinase II subunit alpha-1 OS=Arabidopsis th...	[more]
CSK2A_MAIZE	4.719e-28	93.55	Casein kinase II subunit alpha OS=Zea mays GN=ACK2...	[more]
CSK23_ARATH	2.589e-26	87.10	Probable casein kinase II subunit alpha OS=Arabido...	[more]
CSK2A_THEAN	5.587e-21	74.60	Casein kinase II subunit alpha OS=Theileria annula...	[more]
CSK2A_SCHPO	5.587e-21	74.19	Casein kinase II subunit alpha OS=Schizosaccharomy...	[more]
CSK2A_NEUCR	1.245e-20	70.97	Casein kinase II subunit alpha OS=Neurospora crass...	[more]
CSK2A_DICDI	1.245e-20	72.58	Casein kinase II subunit alpha OS=Dictyostelium di...	[more]
CSK2A_THEPA	1.626e-20	73.02	Casein kinase II subunit alpha OS=Theileria parva ...	[more]
CSK21_XENLA	1.521e-18	66.13	Casein kinase II subunit alpha OS=Xenopus laevis G...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-703-015-F05-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY720885 ID=EY720885; Name=EY720885; organism=Citrus sinensis; type=EST; length=855bp
CACGCGTCCGAAAAATACTTCAGAACCTCTGTGGTGGTCCAAATGTTGTA
AAGCTTCTTGATATTGTTAGAGATCAGCACTCAAAAACTCCTAGCTTGAT
ATTTGAGTATGTGAACAGCACTGATTTTAAAGTTTTGTACCCCACATTGA
CTGACTATGACATACGCTATTACATATACGAGCTTCTGAAGGTAATGTCC
ATTTTTATTCGGTGGTCAACCGTTCTCTGTTACCAATCTTTTTTGTATAT
TAATCCTTAGCAGCAACTAAGTTTTCACATAACATTTTGTTACACATTCT
TAAGCTTGGTTTTGCTGATTGAGAGGAGAATCAATTGGAATGTGCATTTT
ATTTAAATCTACCAAGGGGATCACAAAATTTATGATTTACTCAGATGAAC
TTCCTCNTATAATCATTTCTGAATTTTTTAAGGAGCAGTTCATATTGTTG
TATGTGTACCCTATCCTGCTNCACTAGCTAAGCTACACTCAAATTGCAGG
CATTAGATTACTGCCATTCACAGGGAATTATGCATANAGAATGTCAGCCT
TCACATGTTATGATAGACCATGAGTTGCGTTAAACTTCGTTGATTGACTG
GGGGTCNNTGCTGAATTTACCATCCCTGNCNAGGAGTATAAAATGTCGTG
TGGCTTCTAGATACTTCCAAGGACCANAACTCTTGTTGGATTTACAGGAT
TATGACTACTCTTTAAATATGTTGAAGCTTTGGTTGCATGTTTGCCGGAA
TGATATTCCGGAAGGGACCATCCTTTTATGTCATGACAACATGATCCACC
TGGTCAAATGGCCAGGTTACGACAATCTGGAATTTTCCAAATGGATTAAA
ACTAA