EY720860

Overview
NameEY720860
Unique NameEY720860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY720860 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 38/126 (30.16%), Postives = 63/126 (50.00%), Query Frame = 2 
Query:   35 VICWILCLIFGRQISYLFTTSEEIAEEXXXXXXXXXXXXXXXXXQPVLSGVAVGAGMQSTVAFVNLGSYYFVGVPTGVLLAYVANXXXXXXXXXXXXXXXXQTIILSFIIWRTDWDDQVNKASQRL 412
            V+C ++ L+F   +S  FT+  E+                    QP+LSGVA+G+G Q+ VA+VNL +YY +G+P G +L +  +                QT+ L  +  +T+W  +V  A+QR+
Sbjct:  368 VLC-VIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQRV 492
The following BLAST results are available for this feature:
BLAST of EY720860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TT12_ARATH5.200e-1230.16Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-015-D03-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720860 ID=EY720860; Name=EY720860; organism=Citrus sinensis; type=EST; length=578bp
CACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGGTGATCTGTTGGATTT
TATGTTTAATCTTTGGCCGTCAGATTTCATACCTGTTTACAACTAGTGAG
GAAATTGCGGAAGAAGTATCGAAACTATCTGTTCTGCTTTCTTTCTCCCT
TTTGCTTAACAGCGTTCAGCCAGTACTCTCAGGGGTAGCTGTAGGTGCTG
GAATGCAAAGCACGGTTGCATTTGTTAACTTGGGAAGCTATTACTTTGTT
GGAGTTCCTACAGGAGTTTTGCTTGCATATGTGGCCAATCTCGGAGTTAC
GGGTTTATGGATTGGATTGTTGGGTGGAATTGTTATTCAAACCATTATTC
TTTCCTTCATCATATGGAGGACCGATTGGGATGATCAGGTGAACAAGGCA
TCCCAACGTCTCAACAAATGGTTGCTGAAACCATCTGAAAAATCTGATCG
AAGCTCTCTAAATATGTAGAGTTGTGTAATTCATTACTTGCACAAGAATA
TTTGTCGGTTGGGCCTATCAGTAGAATAATAATAAATCTGAATGAGTTGA
ATCCAAAGTTATTCTTTTTTTANNNNAN
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