EY720850

Overview
NameEY720850
Unique NameEY720850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720850 vs. ExPASy Swiss-Prot
Match: MTR4_CAEEL (mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.158e-19
Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL--AGAKVMHLSNES 333
            VKV+FATET + G+NMPART V +S  K   S    +TS E  QMAGRAGRRG D+RG V+L+      A++  +++    +PL SQF  +Y MVLNL+   G  V  + N S
Sbjct:  463 VKVLFATETFSMGLNMPARTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIKGATDPLNSQFRLTYNMVLNLMRVEGMAVSWIINNS 575          
BLAST of EY720850 vs. ExPASy Swiss-Prot
Match: HELY_MYCLE (Probable helicase helY OS=Mycobacterium leprae GN=helY PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.624e-17
Identity = 52/102 (50.98%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    1 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE---GAEECCKLLFAGVEPLVSQFTASYGMVLNLL 297
            VK VFATETLA GINMPART VL  L K      + LT  E  Q+ GRAGRRGID  GH V++  P E   G      L  A   PL S F  SY M +NL+
Sbjct:  367 VKAVFATETLALGINMPARTVVLERLVKFNGKQHVPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPSEDTSGPSAVAGLASARTFPLRSSFVPSYNMTINLV 468          
BLAST of EY720850 vs. ExPASy Swiss-Prot
Match: HELY_MYCTU (Probable helicase helY OS=Mycobacterium tuberculosis GN=helY PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.476e-17
Identity = 50/99 (50.51%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    1 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 297
            VK VFATETLA GINMPART VL  L K      + LT  E  Q+ GRAGRRGID  GH V++  P     E   L      PL S F  SY M +NL+
Sbjct:  364 VKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLV 462          
BLAST of EY720850 vs. ExPASy Swiss-Prot
Match: SKI2_YEAST (Antiviral helicase SKI2 OS=Saccharomyces cerevisiae GN=SKI2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.881e-15
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:    1 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLL 297
            +KV+FATET A G+N+P RT + SS+ K   +G  +LT  E  QMAGRAGRRG+D+ G V+++      +    K +  GV   L SQF  +Y M+LNLL
Sbjct:  716 IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLL 815          
BLAST of EY720850 vs. ExPASy Swiss-Prot
Match: YE02_SCHPO (Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe GN=SPAC17H9.02 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.334e-15
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG--HVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 297
            V+++FATET + G+NMPART + +   K + +    LTS E  QM+GRAGRRGID +G   V+L Q+  E A  C  L+    + L S F  SYGM+LNL+
Sbjct:  460 VRILFATETFSIGLNMPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRGIDTKGLSIVILDQSIDEQAARC--LMNGQADVLNSAFHLSYGMILNLM 558          
BLAST of EY720850 vs. ExPASy Swiss-Prot
Match: SK2L2_MOUSE (Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.334e-15
Identity = 45/99 (45.45%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 297
            +K +FATET A GINMPART + ++  K        ++S E  QM+GRAGRRG+D+RG V+L+           +LL    +PL S F  +Y MVLNLL
Sbjct:  474 IKALFATETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLL 572          
BLAST of EY720850 vs. ExPASy Swiss-Prot
Match: SK2L2_HUMAN (Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.219e-14
Identity = 45/99 (45.45%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 297
            +K +FATET A GINMPART + ++  K        ++S E  QM+GRAGRRG+D+RG V+L+           +LL    +PL S F  +Y MVLNLL
Sbjct:  476 IKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLL 574          
BLAST of EY720850 vs. ExPASy Swiss-Prot
Match: SKIV2_HUMAN (Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.716e-14
Identity = 46/100 (46.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    1 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 297
            VKV+FATET A G+NMPART V  S+ K   S    L   E  QMAGRAGRRG+D  G V+L+ +       +  +++      L SQF  +Y M+LNLL
Sbjct:  656 VKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755          
BLAST of EY720850 vs. ExPASy Swiss-Prot
Match: YJV3_SCHPO (Uncharacterized helicase C550.03c OS=Schizosaccharomyces pombe GN=SPCC550.03c PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.488e-13
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:    1 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 297
            VKV+FATET A G+NMPA++ V S   K        L   E  Q +GRAGRRG+D  G V+++ ++          ++      L+SQF  +Y M+LNLL
Sbjct:  640 VKVLFATETFAMGVNMPAKSVVFSGTQKHDGRNFRDLLPGEYTQCSGRAGRRGLDVTGTVIILSRSELPDTASLRHMIMGPSSKLISQFRLTYNMILNLL 739          

HSP 2 Score: 22.7126 bits (47), Expect = 5.488e-13
Identity = 10/56 (17.86%), Postives = 29/56 (51.79%), Query Frame = 2
Query:  386 LVEQSVGNYVGSNVMLAAKDELGKIQKEIDVLTSQISDDAIDRESMRLLSEGAYKE 553
            ++++S    V   ++   ++++   ++++  L  ++SD  +      LLS  ++KE
Sbjct:  749 MIKRSFSENVNQTLVPQHEEKIKSFEEKLSALKKEMSDVDLKEIKSCLLSSESFKE 804          
BLAST of EY720850 vs. ExPASy Swiss-Prot
Match: YDVG_SCHPO (Uncharacterized helicase C6F12.16c OS=Schizosaccharomyces pombe GN=SPAC6F12.16c PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.689e-13
Identity = 41/99 (41.41%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 297
            +KV+FATET + G+NMPA+T V +++ K        ++  E  QM+GRAGRRG+D+RG V+L+            +L    + L S F  SY M+LNLL
Sbjct:  544 LKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYIQMSGRAGRRGLDDRGIVILMIDEKMDPPVAKSMLKGEADRLDSAFHLSYNMILNLL 642          
The following BLAST results are available for this feature:
BLAST of EY720850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MTR4_CAEEL8.158e-1946.90mRNA transport homolog 4 OS=Caenorhabditis elegans... [more]
HELY_MYCLE2.624e-1750.98Probable helicase helY OS=Mycobacterium leprae GN=... [more]
HELY_MYCTU4.476e-1750.51Probable helicase helY OS=Mycobacterium tuberculos... [more]
SKI2_YEAST1.881e-1546.00Antiviral helicase SKI2 OS=Saccharomyces cerevisia... [more]
YE02_SCHPO9.334e-1546.53Uncharacterized helicase C17H9.02 OS=Schizosacchar... [more]
SK2L2_MOUSE9.334e-1545.45Superkiller viralicidic activity 2-like 2 OS=Mus m... [more]
SK2L2_HUMAN1.219e-1445.45Superkiller viralicidic activity 2-like 2 OS=Homo ... [more]
SKIV2_HUMAN2.716e-1446.00Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=2[more]
YJV3_SCHPO5.488e-1340.00Uncharacterized helicase C550.03c OS=Schizosacchar... [more]
YDVG_SCHPO6.689e-1341.41Uncharacterized helicase C6F12.16c OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-015-C02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720850 ID=EY720850; Name=EY720850; organism=Citrus sinensis; type=EST; length=804bp
GTTAAGGTAGTCTTTGCTACTGAAACACTTGCTGCTGGAATTAACATGCC
TGCTAGGACAGCTGTCCTCTCATCTCTCAGCAAAAGGACTGCTAGTGGAC
GCATCCAGTTAACATCAAATGAACTGTTTCAAATGGCTGGTCGTGCTGGA
CGCAGAGGCATTGATAATAGGGGTCATGTGGTGTTGGTTCAGACCCCTTA
TGAAGGTGCAGAAGAGTGTTGTAAGCTTTTATTTGCTGGAGTTGAACCTC
TTGTATCACAATTCACTGCTTCTTATGGAATGGTGCTGAATCTCCTTGCT
GGTGCAAAAGTTATGCATTTATCAAATGAATCTGATGACATGAAAGCTTT
ACAAGCAGGGTAGAAGTTTGGAAGAAGCTAGGAAATTAGTGGAGCAGAGT
GTTGGAAACTATGTTGGGAGCAATGTAATGCTTGCAGCGAAAGATGAGCT
TGGTAAAATACAGAAAGAGATTGATGTGCTGACTTCACAAATTAGTGATG
ATGCTATAGACAGGGAAAGCATGAGACTGTTGTCGGAGGGCGCATATAAG
GAGATGGCCAGTCTACGGGAAGAGTTGAGGGGCGAAGGACGCGTGCGGGA
TGAACTGCCAATAAGGATGGAACTGGAGACAAGTTTTACCCGGGAGCATA
TGGGGAGGGGATGGTGAGGGGTGGGGGTTGGCTGTGTGGGCGTCTCGCGG
CCGACGAGCCCGAGACAATCGGAGGGGCAGGGTCGGGTGGTTTAGCGGTC
GATCCGAGGGCGGGTGTACGAGTGCAAAAGAGGCAAGGAGAGTGGAAGAG
GGGA
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