EY720840

Overview
NameEY720840
Unique NameEY720840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY720840 vs. ExPASy Swiss-Prot
Match: YGIB_SCHPO (UPF0666 protein C2A9.11c OS=Schizosaccharomyces pombe GN=SPBC2A9.11c PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.608e-15
Identity = 41/121 (33.88%), Postives = 73/121 (60.33%), Query Frame = 3 
Query:    3 TRPKRELLSLMSRLSDKAKQDKAVKHALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEERDSDGLEECVEWLKAHGA 365
            T+ + E+ SL++ L ++ K + AV HAL VR+A+++G+Y  FF LY  APN+   LMDL++E+ R +A+  M ++YRP++ + ++A  L F               + +E+CV + ++  A
Sbjct:  255 TKNRSEMNSLLANLKEEDKTNAAVTHALEVRSAMATGDYYKFFHLYLVAPNMGGYLMDLFIERERVQAMIMMCKAYRPSLTMEFLANTLAF---------------EEMEDCVNFFRSCNA 360
[Close]
BLAST of EY720840 vs. ExPASy Swiss-Prot
Match: LENG8_XENLA (Leukocyte receptor cluster member 8 homolog OS=Xenopus laevis GN=leng8 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 48/142 (33.80%), Postives = 74/142 (52.11%), Query Frame = 3 
Query:    3 TRPKRELLSLMSRLSDKAKQDKAVKHALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEERDSDGLEECVEWLKAHGASLVTDANGEVQLDAKASSSTL 428
            T+   +L + ++ L+ + K D  V HAL++R A +  NY  FF+LY+ AP ++  L+D + E+ R  A+  M +++RP +PVS+V   L F      NE          EEC  +L     SLV   N   Q+D K S + L
Sbjct:  673 TKNSGDLTTELAHLTKELKADACVAHALSLREAWALSNYHRFFKLYRQAPRMSGYLIDKFAERERKAALKAMIKTFRPLLPVSFVQSELAF-----ANE----------EECQSFLAP--LSLVYAGNDASQIDCKLSLAVL 797
The following BLAST results are available for this feature:
BLAST of EY720840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YGIB_SCHPO4.608e-1533.88UPF0666 protein C2A9.11c OS=Schizosaccharomyces po... [more]
LENG8_XENLA1.639e-1233.80Leukocyte receptor cluster member 8 homolog OS=Xen... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-015-A08-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720840 ID=EY720840; Name=EY720840; organism=Citrus sinensis; type=EST; length=859bp
CCACGCGTCCGAAGAGAGAGCTCTTATCATTAATGTCAAGATTATCAGAT
AAGGCAAAGCAAGATAAAGCTGTTAAACATGCTCTAGCAGTTCGTGCTGC
TGTCTCTTCAGGAAATTACATTATGTTCTTCAGACTATACAAGACGGCTC
CTAACTTGAACACCTGCCTTATGGATCTGTATGTAGAAAAGATGCGATTT
AAGGCTGTGAGTTGCATGTCCCGGTCATATCGCCCTACGGTACCCGTTTC
ATATGTTGCTCAAGTTCTAGGCTTCACAGGTGTGTCACCAACAAATGAAG
AATGTGAAGAGAGGGACTCAGACGGACTAGAGGAGTGTGTGGAATGGTTA
AAGGCACATGGCGCATCCCTCGTCACTGATGCTAATGGAGAGGTGCAACT
TGATGCAAAGGCATCGTCATCTACTCTGTTTATGCCAGAACCAGAAGATG
CCGTGTCCCATGGCGATGCCAATCTTGCAGTTAATGACTTTTTGGCGCGG
GCATCCTCTCAGCCGAGTTGATTGTAGTTAAGTCTTTGTGACAGCGCTGG
TAAGAAAAGAATGAACATTAATGCTGCCCACAATATTCTGATCTAGCCGA
AAGGTCAGGGAATGTTGTCCCAACTGGCTGGAACCTGCNGGGGTGGATNN
TGTTTGTACTTTTAGGGAAGGTATANATCGCANAGCTGTATATTTGAAAA
TACTAAAAACTAAAATCCAGAATCCCCTTCTATGAATGGCAGGGAAGGGG
GGCTGATCACCATTTGTAACAATTGAGTAGATTCATTTTTTGGATGTGGA
ATCTTTTTCTTTTGACTACCTGCCCTAGTCACAAATACATGTGTTTAATG
AATGAATTA
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