EY720828

Overview
NameEY720828
Unique NameEY720828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720828 vs. ExPASy Swiss-Prot
Match: PARP1_ARATH (Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana GN=PARP1 PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 9.939e-56
Identity = 135/289 (46.71%), Postives = 170/289 (58.82%), Query Frame = 2
Query:   35 KNGTKAAVQENKEMPAQQSTSKAGTKRKNIG-GVESSKVGKFEGDXXXXXXXXXXXXNNLPDEHASDLESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLXGKWKIPEETNSQYLVKWFXSQRTKKTIRVLPPRTXXXXXXXXXXXXXXXXXXXENLGDLRVSFSRLPKESKEEWKRKLGE*G-E*SWLES*ETNCLVLGGLRMIQC*D-EKARR*S-SYVRED 889
            K    AA  E  E  A+Q+ S+AGTKRKN     E SK+ K   D                       E ++EAQTKELW LKDDLKK+VT+AELREMLE N Q + GSELDLRD CADGMMFG L  CP+CSG L +SGG+YRC GY S WSKCS+ST +P+R+ GKWKIP+ET +Q+L+KW  SQ++ K  R+L P                     E L DL+VS +   KE ++ WK+++ E G E        T+CLV+ GL  I+  +  KARR   + VRED
Sbjct:  191 KKALPAAKTETAE--ARQTNSRAGTKRKNDSVDNEKSKLAKSSFDMSTSGAL-----------QPCSKEKEMEAQTKELWDLKDDLKKYVTSAELREMLEVNEQSTRGSELDLRDKCADGMMFGPLALCPMCSGHLSFSGGLYRCHGYISEWSKCSHSTLDPDRIKGKWKIPDETENQFLLKWNKSQKSVKPKRILRPVLSGETSQGQGSKDATDSSRSERLADLKVSIAGNTKE-RQPWKKRIEEAGAEFHANVKKGTSCLVVCGLTDIRDAEMRKARRMKVAIVRED 465          
BLAST of EY720828 vs. ExPASy Swiss-Prot
Match: PARP1_ORYSJ (Poly [ADP-ribose] polymerase 1 OS=Oryza sativa subsp. japonica GN=PARP1 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.801e-50
Identity = 116/258 (44.96%), Postives = 147/258 (56.98%), Query Frame = 2
Query:   68 KEMPAQQSTSKAGTKRKNI-GGVESSKVGKF-----EGDXXXXXXXXXXXXNNLPDEHASDLESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLXGKWKIPEETNSQYLVKWFXSQRTKKTIRVLPPRTXXXXXXXXXXXXXXXXXXXENLGDLRVSFSRLPKESKEEWKRKLGE*G-E*SWLES*ETNCLVL 820
            K+ P+   TS  G+KRKN    +   K  K      EG             +N    ++SDL+ KL+ Q+  LW LKD+LKKHV+TAELR MLEANGQD++G E  L D CADGM+FGALG CP+CS  L Y GG Y C GY S WSKC+YST EP R   KWKIP+E ++ YL KWF SQ+ KK  RVLPP +                   E L  LRVS     K+  + WK+KL + G   +   + +++CLVL
Sbjct:  177 KDAPSSGQTSSKGSKRKNNQNDIHDCKAPKIIRSISEGTAEDKGKAVVSHDSNA---NSSDLQEKLKEQSDTLWKLKDELKKHVSTAELRNMLEANGQDTSGPERHLLDRCADGMLFGALGTCPVCSSFLYYHGGQYHCSGYVSEWSKCTYSTTEPVRSKKKWKIPDEMDNGYLTKWFKSQKAKKPERVLPPMS--PEKSLCQSTQQNRSFLSEGLDKLRVSIVGQSKDVVDGWKQKLKDAGANFNATVTKDSSCLVL 429          
BLAST of EY720828 vs. ExPASy Swiss-Prot
Match: PARP1_MAIZE (Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.254e-42
Identity = 86/180 (47.78%), Postives = 110/180 (61.11%), Query Frame = 2
Query:  224 ASDLESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLXGKWKIPEETNSQYLVKWFXSQRTKKTIRVLPPRTXXXXXXXXXXXXXXXXXXXENLGDLRVSFSRLPKESKEEWKRKL 763
            ++D++ KL+ Q+  LW LKD LK HV+ AELR+MLEANGQD++G E  L D CADGM+FGALG CP+C+  + Y  G Y+C G  S WSKC+YS  EP R+  KW+IP  T + YL+KWF SQ+ KK  RVLPP +                   + L  LR S     KE+  EW  KL
Sbjct:  235 SADIQLKLKEQSDTLWKLKDGLKTHVSAAELRDMLEANGQDTSGPERHLLDRCADGMLFGALGPCPVCANGMYYYNGQYQCSGNVSEWSKCTYSATEPVRVKKKWQIPHGTKNDYLMKWFKSQKVKKPERVLPPMS--PEKSGSKATQRTSLLSSKGLDKLRFSVVGQSKEAANEWIEKL 412          
BLAST of EY720828 vs. ExPASy Swiss-Prot
Match: PARP3_ORYSJ (Poly [ADP-ribose] polymerase 3 OS=Oryza sativa subsp. japonica GN=PARP3 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.504e-22
Identity = 61/192 (31.77%), Postives = 91/192 (47.40%), Query Frame = 2
Query:   32 TKNGTKAAVQEN-KEMPAQQSTSKAGTKRKNIGGVESSKVGKFEGDXXXXXXXXXXXXNNLPDEHASDLESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLXGKWKIPEETNSQYLVKWFXSQRTKK 604
            T++ T AA QE  K  P +Q T      ++  GG ++    K   D            N       SDL  K  A  KE       +++H+T  ++R++L+ N QD++GSE  +   C D M +G L +CP+C G L   G  Y C G  S W+ CS+ST  P R  G  K+P++  + ++ KW   Q   K
Sbjct:    5 TRSRTLAASQEEGKAAPKKQKTES----KEQEGGQQAPSKNKKTADNEEHDGEQEPSKNKKLKAEESDLNGKATA-VKEFSEFCKAIREHLTIEDMRKILQGNEQDASGSEDAVVPRCEDVMFYGPLDKCPVCGGQLECKGLKYNCTGTHSEWACCSFSTNNPSRRGGPIKVPDDVKNDFVRKWLKQQEGNK 191          
BLAST of EY720828 vs. ExPASy Swiss-Prot
Match: PARP1_CRIGR (Poly [ADP-ribose] polymerase 1 OS=Cricetulus griseus GN=PARP1 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 7.948e-21
Identity = 60/173 (34.68%), Postives = 86/173 (49.71%), Query Frame = 2
Query:  113 RKNIGGVESSKVGKFEGDXXXXXXXXXXXXNNLPDEHASDLESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLXGKWKIPEETNSQYLVKWFXSQRTKKTIRVLPPRT 631
            +K + GV+S   GK +GD            +    +  S LE  L+AQ   +W +KD+LKK  +T++L+E+L  N Q     E  + D  ADGM FGAL  C  CSG L +    Y C G  +AW+KC   T+ P R   +W  P+E      + +    + KK  R+ PP T
Sbjct:  196 KKQLPGVKSE--GKRKGDEVDGADEVAKKKSKKGKDKDSKLEKALKAQNDLIWNIKDELKKACSTSDLKELLIFNQQQVPSGESAILDRVADGMAFGALLPCKECSGQLVFKSDAYYCTGDVTAWTKCMVKTQTPSR--KEWVTPKEFRE---ISYLKKLKVKKQDRIFPPET 361          
BLAST of EY720828 vs. ExPASy Swiss-Prot
Match: PARP1_HUMAN (Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4)

HSP 1 Score: 100.908 bits (250), Expect = 1.038e-20
Identity = 60/173 (34.68%), Postives = 86/173 (49.71%), Query Frame = 2
Query:  113 RKNIGGVESSKVGKFEGDXXXXXXXXXXXXNNLPDEHASDLESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLXGKWKIPEETNSQYLVKWFXSQRTKKTIRVLPPRT 631
            +K + GV+S   GK +GD            +    +  S LE  L+AQ   +W +KD+LKK  +T +L+E+L  N Q     E  + D  ADGM+FGAL  C  CSG L +    Y C G  +AW+KC   T+ P R   +W  P+E      + +    + KK  R+ PP T
Sbjct:  196 KKQLPGVKSE--GKRKGDEVDGVDEVAKKKSKKEKDKDSKLEKALKAQNDLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGMVFGALLPCEECSGQLVFKSDAYYCTGDVTAWTKCMVKTQTPNR--KEWVTPKEFRE---ISYLKKLKVKKQDRIFPPET 361          
BLAST of EY720828 vs. ExPASy Swiss-Prot
Match: PARP1_BOVIN (Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PARP1 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 8.788e-20
Identity = 52/133 (39.10%), Postives = 74/133 (55.64%), Query Frame = 2
Query:  233 LESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLXGKWKIPEETNSQYLVKWFXSQRTKKTIRVLPPRT 631
            LE  L+AQ   +W +KD+LKK  +T +L+E+L  N Q+    E  + D  ADGM+FGAL  C  CSG L + G  Y C G  +AW+KC   T+ P R   +W  P+E      + +F   + KK  R+ PP +
Sbjct:  237 LEKALKAQNDLIWNVKDELKKACSTNDLKELLIFNKQEVPSGESAILDRVADGMVFGALLPCEECSGQLVFKGDAYYCTGDVTAWTKCMVKTQTPNR--KEWVTPKEFRE---ISYFKKLKIKKQDRIFPPES 364          
BLAST of EY720828 vs. ExPASy Swiss-Prot
Match: PARP1_MOUSE (Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=Parp1 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.958e-19
Identity = 55/161 (34.16%), Postives = 79/161 (49.07%), Query Frame = 2
Query:  149 GKFEGDXXXXXXXXXXXXNNLPDEHASDLESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLXGKWKIPEETNSQYLVKWFXSQRTKKTIRVLPPRT 631
            GK +GD            +    +  S LE  L+AQ + +W +KD+LKK  +T +L+E+L  N Q     E  + D  ADGM FGAL  C  CSG L +    Y C G  +AW+KC   T+ P R   +W  P+E      + +    + KK  R+ PP +
Sbjct:  206 GKRKGDEVDGTDEVAKKKSRKETDKYSKLEKALKAQNELIWNIKDELKKACSTNDLKELLIFNQQQVPSGESAILDRVADGMAFGALLPCKECSGQLVFKSDAYYCTGDVTAWTKCMVKTQNPSR--KEWVTPKEFRE---ISYLKKLKVKKQDRIFPPES 361          
BLAST of EY720828 vs. ExPASy Swiss-Prot
Match: PARP1_RAT (Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicus GN=Parp1 PE=2 SV=4)

HSP 1 Score: 96.2857 bits (238), Expect = 2.557e-19
Identity = 52/139 (37.41%), Postives = 75/139 (53.96%), Query Frame = 2
Query:  215 DEHASDLESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLXGKWKIPEETNSQYLVKWFXSQRTKKTIRVLPPRT 631
            D+ +S LE  L+AQ + +W +KD+LKK  +T +L+E+L  N Q     E  + D  ADGM FGAL  C  CSG L +    Y C G  +AW+KC   T+ P R   +W  P+E      + +    + KK  R+ PP +
Sbjct:  229 DKESSKLEKALKAQNELVWNIKDELKKACSTNDLKELLIFNQQQVPSGESAILDRVADGMAFGALLPCKECSGQLVFKSDAYYCTGDVTAWTKCMVKTQNPSR--KEWVTPKEFRE---ISYLKKLKIKKQDRLFPPES 362          
BLAST of EY720828 vs. ExPASy Swiss-Prot
Match: PARP1_XENLA (Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis GN=parp1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.269e-18
Identity = 54/136 (39.71%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  218 EHASDLESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLXGKWKIPEETNSQYLVKWFXSQRTKKTIRVLPP 625
            E  S LE  L+ QT+ +W +KD+LKK  +T +L+E+L AN Q     E ++ D  +DGM FGAL  C  CSG   + G  Y C G  SAW+KC   T+ P R    W  P+E +    +K F   + K+  R  PP
Sbjct:  215 EKESKLEKLLKEQTELIWHIKDELKKVCSTNDLKELLIANKQQVPSGETNIVDRVSDGMAFGALLPCEECSGQFVFKGDAYYCTGDLSAWTKCVAKTQTPNR--KDWVTPKEFHEIPYLKKF---KFKRHDRAFPP 345          
The following BLAST results are available for this feature:
BLAST of EY720828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PARP1_ARATH9.939e-5646.71Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thal... [more]
PARP1_ORYSJ2.801e-5044.96Poly [ADP-ribose] polymerase 1 OS=Oryza sativa sub... [more]
PARP1_MAIZE6.254e-4247.78Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP... [more]
PARP3_ORYSJ5.504e-2231.77Poly [ADP-ribose] polymerase 3 OS=Oryza sativa sub... [more]
PARP1_CRIGR7.948e-2134.68Poly [ADP-ribose] polymerase 1 OS=Cricetulus grise... [more]
PARP1_HUMAN1.038e-2034.68Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=... [more]
PARP1_BOVIN8.788e-2039.10Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PA... [more]
PARP1_MOUSE1.958e-1934.16Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=... [more]
PARP1_RAT2.557e-1937.41Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicu... [more]
PARP1_XENLA1.269e-1839.71Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-014-H04-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720828 ID=EY720828; Name=EY720828; organism=Citrus sinensis; type=EST; length=899bp
CCACGCGTCCCGGGTTAACGTTCCTTCTACTACTAAGAATGGAACAAAAG
CTGCGGTACAAGAAAATAAAGAAATGCCTGCCCAGCAATCAACTTCAAAA
GCTGGTACAAAACGTAAAAATATTGGTGGTGTTGAAAGCTCAAAGGTTGG
TAAGTTTGAAGGAGATGTGTCGACAAGCAGGGCTGCATCTGTAGCGTCTT
CAAACAACTTGCCGGATGAACATGCTTCTGATTTGGAAAGTAAACTGGAG
GCCCAGACTAAAGAACTGTGGGCTCTAAAGGATGATCTTAAAAAACATGT
GACAACTGCGGAGTTGCGTGAAATGCTTGAAGCCAATGGTCAAGACTCAA
CAGGATCAGAACTTGATCTCCGTGACCATTGTGCCGATGGGATGATGTTT
GGAGCACTTGGTAGATGCCCGATCTGTTCAGGTCCACTTCGTTACTCTGG
AGGCATCTATCGGTGTCGTGGGTACCAGTCAGCATGGAGCAAGTGTTCAT
ATTCCACTCGTGAACCAGAACGTCTTANAGGGAAGTGGAAAATACCCGAA
GAAACGAATAGCCAATATCTTGTAAAGTGGTTTANATCACAAAGGACTAA
AAAAACTATTCGGGTCCTACCTCCACGCACATCAAACAGTCCTGCTTCAA
GTCAAGCTTCTAAGAGCCCCGTGTCATCTTCGAAAAGTGAAAATTTGGGA
GATTTGAGAGTTTCTTTTTCAAGATTACCTAAGGAATCCAAGGAAGAATG
GAAAAGAAAATTGGGGGAGTAGGGGGAGTAGTCATGGCTAGAATCATAAG
AGACTAACTGCTTAGTCCTGGGAGGATTACGGATGATCCAATGCTGAGAT
GAAAAAGCCAGAAGATGAAGTTCCTATGTTAGGGAGGATACTGGTTGAA
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