EY720823

Overview
NameEY720823
Unique NameEY720823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720823 vs. ExPASy Swiss-Prot
Match: DNLI4_ARATH (DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 5.589e-101
Identity = 186/290 (64.14%), Postives = 230/290 (79.31%), Query Frame = 3
Query:    3 RVREYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGA*YEAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEELMNFLTCTFGILTL-XISTALNNV---DDPKNPNF*YFRKXTVTGPGSCFMA 860
            R  E+PK+APPSFYQVTN+SKERPDVWI+SPEKSIILSITSDIRTIRSEVF APYSLRFPRID+VRYDKPWH+CLDVQ+FVELV+SSNGTTQK KE    QD+ PK  +SS++GEKKNVS+VPS F+QTDVSDIKG+TSIFS+M+FYFVNVP ++SL++ HKMVVENGG FSMNLNNSVTHC+AA++ G  Y+AAKR+ DVIH+SWVLDCCS          Y+LHL+D+S+ KLQ+++  F    +  L L  +   L+N    +D K+ ++ Y +K       SC ++
Sbjct:  517 RKNEHPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTTQKQKESESTQDN-PKVNKSSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNMIFYFVNVPRSHSLETFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHFSWVLDCCSRNKMLPLLPKYFLHLTDASRTKLQDDIDEFSDSYYWDLDLEGLKQVLSNAKQSEDSKSIDY-YKKKLCPEKRWSCLLS 804          
BLAST of EY720823 vs. ExPASy Swiss-Prot
Match: DNLI4_ORYSJ (Putative DNA ligase 4 OS=Oryza sativa subsp. japonica GN=LIG4 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 6.836e-49
Identity = 107/228 (46.93%), Postives = 130/228 (57.02%), Query Frame = 3
Query:    3 RVREYPKRAPPSFYQVTNNSKERPDVWIESPEK-----------------SIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGA*YEAAKRRGDVIHYSWVLDCC 635
            R  EYPK+ PP FY+VTN+SKERPDVWIESP+K                 S+I+SITSDIRTI+SEVF+APYSLRFPRI R+RYDKPWH+CLDVQ+FV++VHSSNGTT                                 H    D +D+K                             V+NGG+FSMNLN+SVTHC+AA+ K      A R+G +IHYSW+LDCC
Sbjct:  596 RKNEYPKK-PPRFYEVTNHSKERPDVWIESPDKQSVRFRKHLIYCITKCRSVIISITSDIRTIKSEVFAAPYSLRFPRIQRLRYDKPWHECLDVQAFVDIVHSSNGTT---------------------------------HRAADDDNDLKN----------------------------VKNGGSFSMNLNDSVTHCIAAEKK------ATRQGRIIHYSWILDCC 755          

HSP 2 Score: 25.7942 bits (55), Expect = 6.836e-49
Identity = 6/22 (27.27%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  701 KATRRVDEFSDLYFWDLDLAXI 766
            K    +D ++D ++WD+D++ +
Sbjct:  776 KFPEEIDSYADYFYWDIDISDL 797          
BLAST of EY720823 vs. ExPASy Swiss-Prot
Match: DNLI4_DICDI (DNA ligase 4 OS=Dictyostelium discoideum GN=lig4 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.010e-17
Identity = 63/234 (26.92%), Postives = 115/234 (49.15%), Query Frame = 3
Query:   30 PPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELV--HSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVS----IVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPA-YSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGA*YEAAKRRG--DVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKK 704
            PPS  Q+    KE+PDVWI+    S +L I +  + + ++ +   Y+LRFPR+ ++R DK W DC   +  ++L   +S+N   ++  EYG     K K+ + S+K   + ++     V S F  TD S I    +IF  +    +      Y+   L  M+VE GG+  +   +  T+ V +  +    +   + G  D++ ++W++DC +          Y +  ++S+KK+
Sbjct:  696 PPSIIQLAEPFKEKPDVWIDPRVYSKVLQIKAS-QIVVTDKYKCGYTLRFPRVLKIRDDKGWKDCCSHEEIIDLFTNYSTNLNFKRDHEYGDGSGGKNKKLKKSKKTTNQLLADSGLKVLSIFQDTDTSGIIPTQNIFQGIEICVIKGSSGEYTKSKLEIMIVEMGGS-KVQYPSRNTNYVISSKEVVKIQNLIQSGFIDIVSFNWIVDCYNEKRLVPLGPKYMIFSTESTKKR 927          
BLAST of EY720823 vs. ExPASy Swiss-Prot
Match: DNLI4_MOUSE (DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.319e-17
Identity = 58/238 (24.37%), Postives = 114/238 (47.90%), Query Frame = 3
Query:    9 REYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGA*YE--AAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEE 716
            + + K++PPS         E+P+V+IE P+ S+I+ I +    + S+++    +LRFPRI+++R DK WH+C+ +    +L   ++G       + G  DD+P++ R     + K    +  H    ++S++   +++F D+ F  ++    Y    L   + E GG    N     T+CV A ++    +   +  + DV+   W+L+C            + +H+  S+K+    E
Sbjct:  527 KPFHKKSPPSSILC---GTEKPEVYIE-PQNSVIVQIKA-AEIVPSDMYKTGSTLRFPRIEKIRDDKEWHECMTLGDLEQLRGKASGKLATKHLHVG-DDDEPREKRRKPISKTKKAIRIIEHLKAPNLSNVNKVSNVFEDVEFCVMSGLDGYPKADLENRIAEFGGYIVQNPGPD-TYCVIAGSENVRVKNIISSDKNDVVKPEWLLECFKTKTCVPWQPRFMIHMCPSTKQHFARE 757          
BLAST of EY720823 vs. ExPASy Swiss-Prot
Match: DNLI4_PONAB (DNA ligase 4 OS=Pongo abelii GN=DNL4 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.249e-17
Identity = 60/238 (25.21%), Postives = 114/238 (47.90%), Query Frame = 3
Query:    9 REYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGA*YE--AAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEE 716
            + + K+APPS         E+P+V+IE P  S+I+ I +    + S+++    +LRFPRI+++R DK WH+C+ +    +L   ++G       Y G  DD+P++ +     + K V  +  H    +++++   ++IF D+ F  ++   +     L   + E GG    N     T+CV A +K    +      + DV+  +W+L+C            + +H+  S+K+    E
Sbjct:  527 KPFHKKAPPSSILC---GTEKPEVYIE-PCNSVIVQIKA-AEIVPSDMYKTGCTLRFPRIEKIRDDKEWHECMTLDDLEQLRGKASGKLASKHFYVG-GDDEPQEKKRKAAPKMKKVIGIIEHLKAPNLTNVNKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPD-TYCVIAGSKNIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPHFMIHMCPSTKEHFARE 757          
BLAST of EY720823 vs. ExPASy Swiss-Prot
Match: DNLI4_HUMAN (DNA ligase 4 OS=Homo sapiens GN=LIG4 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.904e-16
Identity = 58/238 (24.37%), Postives = 114/238 (47.90%), Query Frame = 3
Query:    9 REYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGA*YE--AAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEE 716
            + + ++APPS         E+P+V+IE P  S+I+ I +    + S+++    +LRFPRI+++R DK WH+C+ +    +L   ++G       Y G  DD+P++ +     + K V  +  H    +++++   ++IF D+ F  ++   +     L   + E GG    N     T+CV A ++    +      + DV+  +W+L+C            + +H+  S+K+    E
Sbjct:  527 KPFHRKAPPSSILC---GTEKPEVYIE-PCNSVIVQIKA-AEIVPSDMYKTGCTLRFPRIEKIRDDKEWHECMTLDDLEQLRGKASGKLASKHLYIG-GDDEPQEKKRKAAPKMKKVIGIIEHLKAPNLTNVNKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPD-TYCVIAGSENIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFARE 757          
BLAST of EY720823 vs. ExPASy Swiss-Prot
Match: DNLI4_ASPFU (DNA ligase 4 OS=Aspergillus fumigatus GN=lig4 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.234e-15
Identity = 64/213 (30.05%), Postives = 103/213 (48.36%), Query Frame = 3
Query:   18 PKRAPPSFYQVTNNSK--ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFV---NVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCV-AADNKGA*YEAAKRRGDV--IHYSWVLDC 632
            PK+ P ++ ++       ERPD+WI+ PE S+++ + +      S+ F    +LRFPR  R+R DK W   L VQ F++L    +   Q+ +E   L  D  ++ R  R  +K     V  + +  DV        IF  + FY +   + P   +   L ++V  NGG F    NN+  H +  AD +     + ++RGDV  I  SW++DC
Sbjct:  597 PKKPPTAYIELAGRDAQYERPDMWIK-PEDSVVICVKA-ASVSASDQFRLGLTLRFPRFKRLRMDKDWKSALSVQEFLDL---KSNVEQEHRE-KELNVDNSRRKRVKRTAKKP--LTVAGYDMDEDVKYAGPSGHIFDGLNFYILTDSSAPIKKTKPELEQLVKANGGMF-FQTNNAAPHTICVADRRTVKAASLQKRGDVDIIRPSWIIDC 800          
BLAST of EY720823 vs. ExPASy Swiss-Prot
Match: DNLI4_ASPOR (DNA ligase 4 OS=Aspergillus oryzae GN=lig4 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.750e-15
Identity = 61/215 (28.37%), Postives = 105/215 (48.84%), Query Frame = 3
Query:   12 EYPKRAPPSFYQVTNNSK---ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFV---NVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGA*YEAAKRRGDV--IHYSWVLDC 632
            E+  R PP+ Y          ERPD+WI+ PE S++L + +    + S+ F    +LRFPR  ++R DK W   L VQ F++L   +N   ++ ++   + + + K+   +++  KK ++IV  +  + +        +IF  + FY     N P   S   L ++V  NGG F    N + +    AD +     + ++ G+V  I  SW+LDC
Sbjct:  591 EWKSRKPPTTYIELAGGDAQYERPDMWIK-PEDSVVLCVKAASVAV-SDQFRIGLTLRFPRFKKLRMDKDWKSALSVQEFLDL--KANAERERKEKEFNVDNSRKKR---AKRDNKKPLAIV-GYSAEAEAQYTGPSGNIFEGLNFYITTDSNTPVKKSKAELEQLVKANGGKFFQTSNAAPSTICIADRRTVKAASLQKSGNVNIIRPSWILDC 797          
BLAST of EY720823 vs. ExPASy Swiss-Prot
Match: DNLI4_CHICK (DNA ligase 4 OS=Gallus gallus GN=LIG4 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.591e-15
Identity = 55/219 (25.11%), Postives = 102/219 (46.58%), Query Frame = 3
Query:   66 ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHC--VAADNKGA*YEAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEE 716
            E+P+++IE P  S+I+ I +    + S+++    +LRFPRI+++R DK W++C+ +     L   + G       Y   + D+P++ +     + K V  +   F   D+S++   +S+F D+ F  +     YS   L   + E GG+   N     T+C  V A+N       A  + DV+   W+L C            + +H+S  +++    E
Sbjct:  548 EKPEMYIE-PCNSVIVQIKA-AEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMTLDMLEHLRSRAEGKLASKHLYID-EYDEPQEKKRRTVPKVKKVIGIAEQFKAPDLSNVNKVSSMFEDVEFCVMTGMGRYSKSELESRIAECGGSVVQNPGPD-TYCVIVGAENVRVKNIIASNKYDVVKAEWLLQCFQSKMLVPWQPAFMIHMSPETREHFARE 762          
BLAST of EY720823 vs. ExPASy Swiss-Prot
Match: DNLI4_EMENI (DNA ligase 4 OS=Emericella nidulans GN=lig4 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.970e-13
Identity = 62/214 (28.97%), Postives = 102/214 (47.66%), Query Frame = 3
Query:   18 PKRAPPSFYQVTNNSK--ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSR-KGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFV---NVPPAYSLDSLHKMVVENGG-TFSMNLNNSVTHCVAADNKGA*YEAAKRRG--DVIHYSWVLDC 632
            PK+ P ++ ++       ERPD+WI+ PE S+++ + +   ++ S+ F    +LRFPR  R+R DK W   L VQ F++L    +   Q+ +E    ++   + FR  R K   K    +  +    +V        IF  + F+ +   N P   S   L  +V  NGG  F  N     T C+ AD +     + +++G  D+I  SW+LDC
Sbjct:  591 PKKPPTTYIELAGGDSQYERPDMWIK-PEDSVVICVKAASVSV-SDQFRIGLTLRFPRFKRLRMDKDWKSALSVQEFLDL---KSHAEQEHRE----KEFNVENFRKKRVKKTTKKPLAIAGYDENAEVQYAGPSGHIFDGLNFFILTDSNAPVKKSKAELENLVKANGGRIFQTNDAVPDTICI-ADRRTVKAASLQKKGDIDIIRPSWILDC 794          
The following BLAST results are available for this feature:
BLAST of EY720823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DNLI4_ARATH5.589e-10164.14DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 ... [more]
DNLI4_ORYSJ6.836e-4946.93Putative DNA ligase 4 OS=Oryza sativa subsp. japon... [more]
DNLI4_DICDI1.010e-1726.92DNA ligase 4 OS=Dictyostelium discoideum GN=lig4 P... [more]
DNLI4_MOUSE1.319e-1724.37DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=1[more]
DNLI4_PONAB2.249e-1725.21DNA ligase 4 OS=Pongo abelii GN=DNL4 PE=2 SV=1[more]
DNLI4_HUMAN1.904e-1624.37DNA ligase 4 OS=Homo sapiens GN=LIG4 PE=1 SV=2[more]
DNLI4_ASPFU1.234e-1530.05DNA ligase 4 OS=Aspergillus fumigatus GN=lig4 PE=3... [more]
DNLI4_ASPOR2.750e-1528.37DNA ligase 4 OS=Aspergillus oryzae GN=lig4 PE=3 SV... [more]
DNLI4_CHICK3.591e-1525.11DNA ligase 4 OS=Gallus gallus GN=LIG4 PE=2 SV=2[more]
DNLI4_EMENI1.970e-1328.97DNA ligase 4 OS=Emericella nidulans GN=lig4 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-014-G08-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720823 ID=EY720823; Name=EY720823; organism=Citrus sinensis; type=EST; length=866bp
CACGCGTCCGTGAATATCCAAAAAGGGCACCTCCAAGTTTTTATCAAGTT
ACAAATAATTCAAAGGAGAGACCTGATGTTTGGATTGAGAGCCCTGAGAA
ATCAATAATACTTTCTATTACCAGTGATATTCGAACCATAAGGTCTGAGG
TTTTTTCTGCACCATACAGCCTGAGATTTCCACGCATTGATAGAGTGAGA
TATGACAAGCCTTGGCATGATTGCCTTGACGTGCAGTCATTTGTAGAACT
TGTGCATTCAAGTAATGGCACCACTCAGAAGGGGAAAGAATATGGAGGCT
TGCAAGATGATAAGCCAAAACAATTCAGATCCTCCAGAAAGGGAGAGAAA
AAGAATGTGTCTATTGTTCCTTCTCATTTTCTTCAGACTGATGTTTCTGA
CATAAAGGGGGAAACCTCAATATTTTCAGATATGGTGTTTTATTTTGTTA
ATGTACCTCCAGCCTATTCCCTTGACTCCTTGCACAAAATGGTTGTTGAG
AATGGAGGAACATTTTCAATGAATTTGAATAACTCAGTTACCCACTGTGT
TGCAGCTGATAACAAAGGGGCTTAATATGAGGCAGCAAAACGTCGTGGAG
ATGTTATTCATTACTCTTGGGTCTTGGATTGTTGTTCACAAAAGAAGCTT
CTCCAATTGCAGCCAAAGTACTACCTTCATCTATCTGACTCTTCGAAGAA
AAAGCTACAAGAAGAGTTGATGAATTTTCTGACCTGTACTTTTGGGATCT
TGACCTTGCANATATCAACAGCTCTTAACAATGTTGATGATCCGAAGAAC
CCAAACTTTTGATATTTTAGGAAAANTACTGTCACAGGACCAGGGTCCTG
CTTCATGGCTGGTGCT
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