EY720805

Overview
NameEY720805
Unique NameEY720805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720805 vs. ExPASy Swiss-Prot
Match: RK3_TOBAC (50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum GN=RPL3 PE=1 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 2.998e-102
Identity = 184/235 (78.30%), Postives = 203/235 (86.38%), Query Frame = 2
Query:   32 TTKRTTTHI----VSMSYEAGIGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG*PGNLLRVAPAKIVGKNIP 724
            T K T+ HI    +S S EAG+GVM TKLGMMS+FE            FREGNIVTQ+KTEATDGY+AVQ+GYRRVRD+KLTKPE+GHL+KSG+IP+RHLQEFRLQSIDGFE  QKL F E+F EGDLVDVSGTTIGKGFQGGIKRHNF+RG MTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGT RKIRKLKIVKID+ L ++MIKGA+PG PGNLLR+APAKIVGKNIP
Sbjct:   23 THKPTSLHISKSSISASLEAGVGVMATKLGMMSFFEESGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRVRDRKLTKPEMGHLEKSGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDQLNIIMIKGALPGKPGNLLRIAPAKIVGKNIP 257          
BLAST of EY720805 vs. ExPASy Swiss-Prot
Match: RK3A_ARATH (50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana GN=RPL3A PE=1 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 2.375e-99
Identity = 180/236 (76.27%), Postives = 197/236 (83.47%), Query Frame = 2
Query:   23 LIFTTKRTTTHIVSMSYEAGIGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG*PGNLLRVAPAKIVGKNIPXN 730
            L+  +   T  +VS S EAGIGVMG+KLGMMS+FE            FREGNIVTQ+KT ATDGYDAVQIGYRRVRDKKLTKPE GHLQK+G IPMRHLQEFRL +I+GFE  QKL F+EIF EGDLVDV+GTTIGKGFQGGIKRH+F+RG MTHGSKSHR LGSIGAGTTPGRVYKGKKMPGRMGGT  KIRKLKIVK+D +L VVMIKGA+PG PGNLLR+ PAKIVG NIP N
Sbjct:   36 LLIKSSPKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271          
BLAST of EY720805 vs. ExPASy Swiss-Prot
Match: RL3_CYAP7 (50S ribosomal protein L3 OS=Cyanothece sp. (strain PCC 7424) GN=rplC PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.756e-61
Identity = 115/211 (54.50%), Postives = 150/211 (71.09%), Query Frame = 2
Query:   83 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG*PGNLLRVAPAKIVGK 715
            +G++GTKLGM   F+                  +TQVKT ATDGY+++QIGY  V++K L KP+LGHL+KS   P+RHL+E+RL++   ++ G  +  + +F  GDLVDV+G TIG+GF G  KRHNF+RG+MTHGSK+HR  GS GAGTTPGRVY GK+M GR GGT   IRKL +V+ID +  +++IKGAVPG PGNLL + PAK VGK
Sbjct:    3 VGILGTKLGMTQIFDKETGIAIPVTVIHAGPCPITQVKTPATDGYNSIQIGYGEVKEKALNKPKLGHLKKSASTPVRHLKEYRLENAADYQLGDGIKVD-LFKPGDLVDVAGKTIGRGFAGYQKRHNFKRGSMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTQVTIRKLTVVQIDTERNLILIKGAVPGKPGNLLSITPAKTVGK 212          
BLAST of EY720805 vs. ExPASy Swiss-Prot
Match: RL3_SYNP2 (50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplC PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.839e-60
Identity = 113/211 (53.55%), Postives = 148/211 (70.14%), Query Frame = 2
Query:   83 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG*PGNLLRVAPAKIVGK 715
            +G++GTKLGM   F+                  VTQ+KT  TDGY +VQIGY  V++K LTKP+LGHL+K+   P+RHL+E+RL  + G+E GQ +    IF  G +VDVSG TIG+GF G  KRHNF+RG MTHGSK+HR  GS GAGTTPGRVY GK+M GR GGT   +RKL++V++D +  +++IKGA+PG  GNLL +AP+ IVG+
Sbjct:    3 LGILGTKLGMTQIFDNETGTAIPVTVVQAGPCTVTQIKTSETDGYTSVQIGYGDVKEKNLTKPQLGHLKKADAAPLRHLKEYRLDDVSGYELGQAIT-ANIFEAGQVVDVSGNTIGRGFAGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTKITVRKLEVVRVDEEKNLLLIKGAIPGKAGNLLSIAPSNIVGQ 212          
BLAST of EY720805 vs. ExPASy Swiss-Prot
Match: RL3_MICAN (50S ribosomal protein L3 OS=Microcystis aeruginosa (strain NIES-843) GN=rplC PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.839e-60
Identity = 115/211 (54.50%), Postives = 149/211 (70.62%), Query Frame = 2
Query:   83 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG*PGNLLRVAPAKIVGK 715
            IG++GTKLGM   F+                  VTQVKT+ TDGY+++Q+GY+ V++K L KP LGHL K+G+ P+RHL E+RL+    +  GQ++   +IF EGDLVDV+GTTIG+GF G  KRHNF+RG MTHGSK+HR  GS GAGTTPGRV+ GK+M G+ G T   IRKL +VKID++  +++IKGAVPG PG LL + PAK  GK
Sbjct:    3 IGILGTKLGMTQIFDNKTGVAIPVTVVQAGPCPVTQVKTKKTDGYESIQVGYKTVKEKALNKPLLGHLAKAGVSPLRHLIEYRLEDASAYTLGQEIT-ADIFQEGDLVDVAGTTIGRGFSGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVFPGKRMAGQYGSTQVTIRKLSVVKIDSERNLILIKGAVPGKPGTLLNITPAKKFGK 212          
BLAST of EY720805 vs. ExPASy Swiss-Prot
Match: RL3_ACAM1 (50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) GN=rplC PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.139e-59
Identity = 114/213 (53.52%), Postives = 151/213 (70.89%), Query Frame = 2
Query:   83 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNI-VTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG*PGNLLRVAPAKIVGKN 718
            +G++GTKLGM   F+             + G   VTQ+KT  TDGY A+QIGY    +K LT+PELGHL+KSG  P+RHLQE+RL  +  +E GQ ++  ++F+EG LVD+SGT+IG+GF G  KRHNFRRG M HGSK+HR  GS GAGTTPGR+Y GK+M G+MG   + IRKL +V++D +  V++IKG+VPG PG LL + PA IVG++
Sbjct:    3 VGILGTKLGMTQVFDEAGRAIPVTVV--QAGPCPVTQIKTAQTDGYTAIQIGYGSTTEKALTRPELGHLKKSGSTPVRHLQEYRLADVSEYELGQSIS-ADLFSEGQLVDISGTSIGRGFAGYQKRHNFRRGPMGHGSKNHRAPGSTGAGTTPGRIYPGKRMAGQMGNVKKTIRKLTVVRVDAERNVLLIKGSVPGKPGALLNIQPATIVGES 212          
BLAST of EY720805 vs. ExPASy Swiss-Prot
Match: RL3_CYAA5 (50S ribosomal protein L3 OS=Cyanothece sp. (strain ATCC 51142) GN=rplC PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.010e-57
Identity = 110/211 (52.13%), Postives = 145/211 (68.72%), Query Frame = 2
Query:   83 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG*PGNLLRVAPAKIVGK 715
            +G++GTKLGM   FE                  +TQ+KT  TDGY A+QIGY  V++K LTKPELGHL+K    P+RHL+E+R+     +  G+ +   +IFN GDLVD++GT++G+GF G  KRHNF+RG+MTHGSK+HR  GS GAGTTPGRVY GKKM G+ G      R L++V++D +  +++IKGAVPG PG LL + PAKIVGK
Sbjct:    3 VGLLGTKLGMTQIFEEESGLAIPVTVVQAGPCTITQIKTAETDGYSAIQIGYLEVKEKALTKPELGHLKKVEASPLRHLKEYRVDDTATYTLGEAVK-ADIFNAGDLVDIAGTSMGRGFAGYQKRHNFKRGSMTHGSKNHRLPGSTGAGTTPGRVYPGKKMAGQYGAVKTTTRHLQVVRVDAERNLLLIKGAVPGKPGGLLNITPAKIVGK 212          
BLAST of EY720805 vs. ExPASy Swiss-Prot
Match: RL3_CYAP8 (50S ribosomal protein L3 OS=Cyanothece sp. (strain PCC 8801) GN=rplC PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.938e-57
Identity = 109/211 (51.66%), Postives = 143/211 (67.77%), Query Frame = 2
Query:   83 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG*PGNLLRVAPAKIVGK 715
            +G++GTKLGM   F+                  VTQVKT  TDGY A+Q+GY  V++K LTK E+GHL+K    P+RHL+E+RL     ++ G  +   +IFN GDLVDVSG ++G+GF G  KRHNF+RG MTHGSK+HR  GS GAGTTPGRVY GK+M G+ G T   IR L +V++D+D  ++++KGA+PG PG LL + PAK VGK
Sbjct:    3 VGILGTKLGMTQIFDQETGMAIPVTVVQAGPCTVTQVKTPDTDGYTAIQVGYHEVKEKALTKAEIGHLKKIDAPPLRHLKEYRLDDSSQYQLGDAIK-ADIFNPGDLVDVSGKSMGRGFAGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGQYGATQVTIRHLTVVRVDSDRNLILVKGAIPGKPGTLLNITPAKTVGK 212          
BLAST of EY720805 vs. ExPASy Swiss-Prot
Match: RL3_THEEB (50S ribosomal protein L3 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplC PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.547e-57
Identity = 108/211 (51.18%), Postives = 146/211 (69.19%), Query Frame = 2
Query:   83 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG*PGNLLRVAPAKIVGK 715
            +G++GTKLGM   F+                 I TQ+KT  TDGY A+Q+ Y  VR+K L++PE GHL KS   PMRHL+EFRL+ +  ++ GQ +  + IF+ G LVDV GT+IG+GF G  KRHNF+RG M HGSK+HR  GS GAGTTPGRV+ GK+M GRMG T   IRKL+++++D +  +++IKGA+PG PG L+ + PAK+VG+
Sbjct:    3 VGILGTKLGMTQIFDEAGRSVPITVVQAGPCPI-TQIKTPQTDGYTAIQVAYGEVREKNLSRPERGHLNKSQTPPMRHLREFRLEDVSAYQLGQAITVD-IFSPGQLVDVRGTSIGRGFAGYQKRHNFKRGPMAHGSKNHRLPGSTGAGTTPGRVFPGKRMAGRMGNTAVTIRKLQVMRVDPERNLILIKGALPGKPGALVSITPAKVVGR 211          
BLAST of EY720805 vs. ExPASy Swiss-Prot
Match: RK3_BIGNA (50S ribosomal protein L3, chloroplastic OS=Bigelowiella natans GN=RPL3 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.242e-56
Identity = 103/213 (48.36%), Postives = 146/213 (68.54%), Query Frame = 2
Query:   83 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIP-MRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG*PGNLLRVAPAKIVGKN 718
            +G+MGTK GM +Y++               GN+VTQVKT+ TDGYDAVQ+ Y+  RD+ +  PE  HL+K G +  M+HL+EF++  +  F  GQ+L  EE+F  GDLVDVSGT+ GKGFQG I+R   +RG M+HGSKSHRQ GSIG   TP RVYKG KM GRMG   + ++KL ++ ++++ + ++++G+VPG  G ++ + P KIVGK+
Sbjct:   89 MGLMGTKAGMTTYYDDEGIAHPVTVIALEAGNVVTQVKTKETDGYDAVQLAYKETRDRTIPWPERQHLRKHGNVKAMKHLKEFKIADVSEFTPGQQLKAEELFEVGDLVDVSGTSSGKGFQGSIRRWGMKRGPMSHGSKSHRQHGSIGCSATPSRVYKGLKMAGRMGNERKTVKKLPVMMVNDEEKYIVVRGSVPGKKGTIVELRPTKIVGKH 301          
The following BLAST results are available for this feature:
BLAST of EY720805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK3_TOBAC2.998e-10278.3050S ribosomal protein L3, chloroplastic (Fragment)... [more]
RK3A_ARATH2.375e-9976.2750S ribosomal protein L3-1, chloroplastic OS=Arabi... [more]
RL3_CYAP79.756e-6154.5050S ribosomal protein L3 OS=Cyanothece sp. (strain... [more]
RL3_SYNP22.839e-6053.5550S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RL3_MICAN2.839e-6054.5050S ribosomal protein L3 OS=Microcystis aeruginosa... [more]
RL3_ACAM13.139e-5953.5250S ribosomal protein L3 OS=Acaryochloris marina (... [more]
RL3_CYAA51.010e-5752.1350S ribosomal protein L3 OS=Cyanothece sp. (strain... [more]
RL3_CYAP82.938e-5751.6650S ribosomal protein L3 OS=Cyanothece sp. (strain... [more]
RL3_THEEB8.547e-5751.1850S ribosomal protein L3 OS=Thermosynechococcus el... [more]
RK3_BIGNA4.242e-5648.3650S ribosomal protein L3, chloroplastic OS=Bigelow... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-014-E09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720805 ID=EY720805; Name=EY720805; organism=Citrus sinensis; type=EST; length=872bp
CACGCGTCCGCCCAAGCAGCCTCTCATTTTTACCACCAAAAGAACCACAA
CCCACATAGTTTCAATGAGCTACGAGGCGGGAATTGGCGTAATGGGCACC
AAGCTAGGCATGATGTCGTACTTCGAGCCCGACGGAACTGTTGTTCCGGT
GACTGTAGTTGGGTTCAGAGAAGGGAACATTGTGACCCAGGTTAAGACTG
AAGCCACTGACGGGTACGACGCCGTTCAGATTGGTTATAGGAGAGTAAGG
GACAAGAAGCTGACGAAACCTGAGCTGGGTCACTTGCAAAAGTCTGGGTT
AATACCCATGAGGCATTTGCAGGAGTTTAGGTTACAGTCTATTGATGGGT
TTGAGGCTGGCCAAAAGTTGGCTTTTGAAGAGATTTTTAATGAAGGGGAT
CTTGTCGATGTTTCTGGGACTACTATTGGCAAGGGTTTTCAAGGTGGCAT
TAAGCGGCACAATTTCAGAAGGGGTGCGATGACCCATGGTTCTAAGAGTC
ATAGACAATTGGGTTCCATTGGTGCTGGAACAACTCCGGGCCGTGTATAC
AAGGGGAAGAAGATGCCTGGAAGAATGGGAGGGACAACAAGGAAGATCAG
AAAGCTCAAGATTGTAAAAATTGATAATGACCTTCGTGTTGTAATGATAA
AAGGGGCTGTCCCTGGTTAGCCCGGAAATCTTCTGCGTGTAGCACCAGCT
AAGATTGTTGGGAAGAACATACCANATAACTAGGTTGGTGCATTATTCTG
ATTGCTTCGCTTTGTGCAGTTCTACATTGTCCAAGAGATTAGTCTTGGTA
ACCCTTCGTTTTGTGAGTGGCATTTAGACTTTCAGTTACATTTTGTGATG
TATATTGGCTCCTTTGCGAGAT
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