EY720800

Overview
NameEY720800
Unique NameEY720800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720800 vs. ExPASy Swiss-Prot
Match: PTPM1_MOUSE (Protein-tyrosine phosphatase mitochondrial 1 OS=Mus musculus GN=Ptpmt1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.229e-16
Identity = 55/161 (34.16%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  106 AKRALVGAG-ARILFYPTLLYNVFRNKIQ--AEFRWWDEVDQCLLLGAVPFPKDVPRLK-QLGVGGVISLNEPYETLV---PSSLYHAPGIDHLMIPTIDYLFAPSFVDIKRAEDFIHNNSCAG*TTYVHCKAGHGETTTQCPMLEGEVQASGPAGGVENV 567
            A  A + AG AR+LFYPTLLY VFR +++  A   W+  +D  +LLGA+P      RL     V GVI++NE YET      S  +   G++ L + T+D    P+  ++ +   F       G   YVHCKAG   + T       +V    P   +E +
Sbjct:    2 AASAWLEAGLARVLFYPTLLYTVFRGRVRGPAHRDWYHRIDHTVLLGALPLKNMTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQFALKYQALGQCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAI 162          
BLAST of EY720800 vs. ExPASy Swiss-Prot
Match: PTPM1_RAT (Protein-tyrosine phosphatase mitochondrial 1 OS=Rattus norvegicus GN=Ptpmt1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.194e-16
Identity = 56/161 (34.78%), Postives = 78/161 (48.45%), Query Frame = 1
Query:  106 AKRALVGAG-ARILFYPTLLYNVFRNKI--QAEFRWWDEVDQCLLLGAVPFPKDVPRLK-QLGVGGVISLNEPYETLV---PSSLYHAPGIDHLMIPTIDYLFAPSFVDIKRAEDFIHNNSCAG*TTYVHCKAGHGETTTQCPMLEGEVQASGPAGGVENV 567
            A  A + AG AR+LFYPTLLY VFR ++   A   W+  +D  +LLGA+P      RL     V GVI++NE YET      S  +   G++ L + T+D    P+  ++ R   F       G   YVHCKAG   + T       +V    P   +E +
Sbjct:    2 AASAWLEAGLARVLFYPTLLYTVFRGRVGGPAHRDWYHRIDHTVLLGALPLRSMTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKNVGVEQLRLSTVDMTGVPTLANLHRGVQFALKYQSLGQCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAI 162          
BLAST of EY720800 vs. ExPASy Swiss-Prot
Match: PTPM1_HUMAN (Protein-tyrosine phosphatase mitochondrial 1 OS=Homo sapiens GN=PTPMT1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.395e-16
Identity = 53/140 (37.86%), Postives = 76/140 (54.29%), Query Frame = 1
Query:  106 AKRALVGAG-ARILFYPTLLYNVFRNKI--QAEFRWWDEVDQCLLLGAVPFPKDVPRLKQ-LGVGGVISLNEPYETLV---PSSLYHAPGIDHLMIPTIDYLFAPSFVDIKRAEDFIHNNSCAG*TTYVHCKAGHGETTT 504
            A  AL+ AG AR+LFYPTLLY +FR K+  +A   W+  +D  +LLGA+P      +L Q   V GVI++NE YET      S  +   G++ L + T+D    P+  ++++   F       G   YVHCKAG   + T
Sbjct:    2 AATALLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQLVQDENVRGVITMNEEYETRFLCNSSQEWKRLGVEQLRLSTVDMTGIPTLDNLQKGVQFALKYQSLGQCVYVHCKAGRSRSAT 141          
BLAST of EY720800 vs. ExPASy Swiss-Prot
Match: PTPM1_DROME (Protein-tyrosine phosphatase mitochondrial 1-like protein OS=Drosophila melanogaster GN=Plip PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.085e-11
Identity = 53/179 (29.61%), Postives = 83/179 (46.37%), Query Frame = 1
Query:  133 ARILFYPTLLYNVFRNKIQAEFRWWDEVDQCLLLGAVPFPKDVPRL-KQLGVGGVISLNEPYETLVPSS---LYHAPGIDHLMIPTIDYLFAPSFVDIKRAEDFIH-----NNSCAG*TT----------YVHCKAGHGETTTQCPMLEGEVQASGPAGGVENVPPTTPPMCRHHTEEW 612
            AR+ FYPTLLYNV   K  A   W+D +D+ ++LGA+PF      L ++  +  V+S+NE YE    S+    +   GI+ L + T D   +P+   + R  +FI+          G ++          YVHCKAG   + T             P   V+++    P +   HT++W
Sbjct:    9 ARVSFYPTLLYNVLMEKASAR-NWYDRIDEHVILGALPFRSQANDLIEKENMKAVVSMNEDYELTAFSNNTEKWRKLGIEFLQLATTDIFESPNQEKLFRGVEFINKFLPLKQRIGGLSSSYQPENVGSVYVHCKAGRTRSATLVGCYLMMKNGWTPDQAVDHMRKCRPHILL-HTKQW 185          
The following BLAST results are available for this feature:
BLAST of EY720800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PTPM1_MOUSE3.229e-1634.16Protein-tyrosine phosphatase mitochondrial 1 OS=Mu... [more]
PTPM1_RAT7.194e-1634.78Protein-tyrosine phosphatase mitochondrial 1 OS=Ra... [more]
PTPM1_HUMAN9.395e-1637.86Protein-tyrosine phosphatase mitochondrial 1 OS=Ho... [more]
PTPM1_DROME4.085e-1129.61Protein-tyrosine phosphatase mitochondrial 1-like ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-014-D10-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720800 ID=EY720800; Name=EY720800; organism=Citrus sinensis; type=EST; length=863bp
CCACCCACGCGTCCGGTTGGTGAGATGAAGATCGAGGAGCTGGACGACGT
GGAGCATGATCGAAACGACGACGGTTGCCGTACGACGCAGATAGTGAAGG
CTGACGCTAAGAGAGCGTTGGTCGGGGCGGGTGCTCGGATCCTCTTCTAC
CCGACCCTTTTGTATAATGTATTTCGTAACAAAATCCAAGCTGAGTTCAG
ATGGTGGGACGAAGTCGATCAGTGTCTTCTACTTGGCGCGGTGCCGTTTC
CTAAGGACGTTCCACGGTTGAAGCAACTTGGCGTCGGTGGAGTCATCAGT
CTCAATGAACCCTATGAAACTCTGGTTCCATCTTCCTTGTATCATGCACC
TGGGATCGACCACTTAATGATTCCCACAATAGATTATCTCTTTGCTCCTT
CTTTTGTCGATATAAAGAGAGCTGAGGACTTCATTCATAATAATTCATGT
GCAGGGTAAACGACTTATGTACATTGTAAAGCCGGCCACGGAGAGACCAC
AACACAGTGTCCTATGCTTGAGGGTGAAGTACAAGCCAGTGGGCCCGCTG
GCGGCGTGGAAAATGTACCCCCTACAACGCCCCCGATGTGCAGGCACCAC
ACAGAGGAGTGGGTGCAGAATAGAGCCAAAAAAAAGGGAGATAGAAAGAC
CCGGCCGAAGGAGGGGAGGGGTGTGATAGAGGAAGTGTACGAGAGGAAGG
AGTAGCGACCGGGACGAGGACCGGGTGAGGGGTTTATAGGAGCAGGAATG
AAGCTGAAGTGGAAGAGGGCAATAGAGGGTGCGCATGAGTTAATTAAATA
GAGTGGGAGAGTAAGATCGTAGGAAGGTGATAGGACGAGAGAGTCAAAGA
TCAAAACCAACAT
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