EY720799

Overview
NameEY720799
Unique NameEY720799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPB2_ARATH (DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana GN=RPB135 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.435e-35
Identity = 77/153 (50.33%), Postives = 99/153 (64.71%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 470
            G ER+Y+G TG  + ++IF+GPT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C  C    +AN+ +             CR C +  DIV+  +PY  KLL QEL SM I
Sbjct: 1029 GFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFE---------CRGCKNKTDIVQVYIPYACKLLFQELMSMAI 1172          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPB2_SOLLC (DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.874e-35
Identity = 75/153 (49.02%), Postives = 100/153 (65.36%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 470
            G E +Y+G TG  + ++IF+GPT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C +C    +AN+ +             CR C +  DIV+ ++PY  KLL QEL +M I
Sbjct: 1028 GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE---------CRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1171          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPB2_CANGA (DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata GN=RPB2 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.072e-34
Identity = 74/152 (48.68%), Postives = 100/152 (65.79%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 473
            G E +Y+G TG+ + + IF GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA L ERL   SD++++HIC  C  ++ + +             C+ CD+  DI + ++PY AKLL QEL +M IT
Sbjct: 1067 GFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAKLNHNQFE------CKGCDNKIDIYQIHIPYAAKLLFQELMAMNIT 1212          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPB2_YEAST (DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces cerevisiae GN=RPB2 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 6.029e-34
Identity = 73/152 (48.03%), Postives = 99/152 (65.13%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 473
            G E +Y+G TG+ + + IF GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAA+ L ERL   SD++++HIC  C  +  + +             C+ CD+  DI + ++PY AKLL QEL +M IT
Sbjct: 1068 GFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFE------CKGCDNKIDIYQIHIPYAAKLLFQELMAMNIT 1213          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPB2_DICDI (DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum GN=polr2b PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.029e-34
Identity = 78/153 (50.98%), Postives = 98/153 (64.05%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 470
            G E +Y+G TG  + + IFIGPT+YQRL HM +DK+  R+ GPV  LTRQPV  R R GG++FGEMERDC+I+HGAA  L ERLF  SDSY++HIC  C    +AN+ +             CR C +   I +  +PY AKLL QEL SM I
Sbjct: 1019 GHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICGLIAIANLKKNSFE---------CRRCKNKTQISQIRMPYAAKLLFQELMSMSI 1162          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPB2_ASHGO (DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii GN=RPB2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.754e-33
Identity = 74/151 (49.01%), Postives = 97/151 (64.24%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 470
            G E +Y+G TG+ + + IF GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA L ERL   SD++++HIC  C  +  V +             CR C +  DI + ++PY AKLL QEL +M I
Sbjct: 1066 GFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVVAKLKHNQFE------CRGCKNKIDIYQVHIPYAAKLLFQELMAMNI 1210          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPB2_PICGU (DNA-directed RNA polymerase II subunit RPB2 OS=Pichia guilliermondii GN=RPB2 PE=3 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 5.104e-33
Identity = 73/164 (44.51%), Postives = 101/164 (61.59%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDAECC*VSM 509
            G E +Y G TG+ + + +F GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+IAHGAA  L ERL   SD++++H+C  C  ++ +               CR C +  +I + ++PY AKLL QEL +M I+ +   E   VS+
Sbjct: 1077 GFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFE------CRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRLYTERSGVSV 1234          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPB2_MOUSE (DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.939e-32
Identity = 75/151 (49.67%), Postives = 89/151 (58.94%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 470
            G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP+  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A                 CR C +   I    +PY  KLL QEL SM I
Sbjct: 1024 GNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMA-------IANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPB2_HUMAN (DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.939e-32
Identity = 75/151 (49.67%), Postives = 89/151 (58.94%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 470
            G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP+  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A                 CR C +   I    +PY  KLL QEL SM I
Sbjct: 1024 GNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMA-------IANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPB2_DROME (DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila melanogaster GN=RpII140 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.321e-32
Identity = 71/151 (47.02%), Postives = 92/151 (60.93%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 470
            G E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGAA  L ERLF +SD Y++HIC  C  +A                 C+ C +   I +  +PY AKLL QEL SM I
Sbjct: 1026 GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIA-------IANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169          
The following BLAST results are available for this feature:
BLAST of EY720799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPB2_ARATH1.435e-3550.33DNA-directed RNA polymerase II subunit RPB2 OS=Ara... [more]
RPB2_SOLLC1.874e-3549.02DNA-directed RNA polymerase II subunit RPB2 OS=Sol... [more]
RPB2_CANGA2.072e-3448.68DNA-directed RNA polymerase II subunit RPB2 OS=Can... [more]
RPB2_YEAST6.029e-3448.03DNA-directed RNA polymerase II subunit RPB2 OS=Sac... [more]
RPB2_DICDI6.029e-3450.98DNA-directed RNA polymerase II subunit rpb2 OS=Dic... [more]
RPB2_ASHGO1.754e-3349.01DNA-directed RNA polymerase II subunit RPB2 OS=Ash... [more]
RPB2_PICGU5.104e-3344.51DNA-directed RNA polymerase II subunit RPB2 OS=Pic... [more]
RPB2_MOUSE1.939e-3249.67DNA-directed RNA polymerase II subunit RPB2 OS=Mus... [more]
RPB2_HUMAN1.939e-3249.67DNA-directed RNA polymerase II subunit RPB2 OS=Hom... [more]
RPB2_DROME4.321e-3247.02DNA-directed RNA polymerase II subunit RPB2 OS=Dro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-014-D09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720799 ID=EY720799; Name=EY720799; organism=Citrus sinensis; type=EST; length=879bp
CACGCGTCCGCAAATGGGGAACGGAGAGACTTTATGATGGCCGAACTGGT
GAAATGGTTCGTTCGCTCATATTTATAGGGCCAACATTTTACCAGCGACT
TATTCACATGTCTGAGGACAAAGTCAAGTTTCGAAACACTGGGCCAGTCC
ACCCCCTCACCCGACAGCCAGTGGCGGACAGGAAGCGATTTGGTGGGATC
AAGTTTGGTGAGATGGAGCGTGACTGTCTTATAGCCCATGGTGCTGCTGC
CAACTTGCATGAACGCCTGTTTACGCTGAGCGACTCCTACCAGATGCATA
TTTGTAGGAAATGCAAGAACGTTGCAAATGTGATCCAACGGGTAGTGGGT
GGTGGACGTAAGGTTCGGGGCCCCTATTGCCGTATATGTGATTCAGGAGA
TGACATAGTTAAGGCTAATGTACCTTATGGAGCGAAGTTACTTTGTCAAG
AACTTTTCAGCATGGGCATCACTTTAAAGTTCGACGCTGAGTGCTGTTGA
GTTTCCATGGTGGCGTGGAACTCATTTAAACCTACTGTTAGGTGTATATA
TGTAAAAATTTGGAGAATATGTGGAAAGCAGTTGTTTAGCTCAACATCCC
TTGTGAGGTCCGACGTTTTGTTCCAGGAGACTGTGATGCATGGCGTATTT
GAAAGGGCGGAATCTCGGCGGCGGCCGAGCCCCTGAGGGTCTTAAAAAAA
ACAAAAAAAAAGGGCTGCCGATCTAATATATCCATGCGTCCGTCACCGTG
GGTGGGAGGTTTTGGCTCGGCCAGAGGGTCGCCCCACTCAGTCGCTGGGC
GAACCGTGTAACGGGTCTGGACGGGGAAAACCGGTGAGTAAAGAAGTTAA
CGGATGGAAGAAATTCCCCTTTGCTGAGG
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