EY720769

Overview
NameEY720769
Unique NameEY720769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720769 vs. ExPASy Swiss-Prot
Match: VRN2_ARATH (Polycomb group protein VERNALIZATION 2 OS=Arabidopsis thaliana GN=VRN2 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 3.956e-49
Identity = 103/213 (48.36%), Postives = 135/213 (63.38%), Query Frame = 2
Query:   65 MCHQNYCELLSAEEATAGEERLLIYCKPVELYNILRHRAQLNPSYLRRCLHYKIRAKHKRRLRP-GIVVFNYRDYTNMLTKTEVTEDFSCPFCLMQCACFKGLRYHLCSSHDLFNYEFWVTDDYQAVNISVKIDTLTSEIVAGGVDPRLQTFFFCAKPRSRKRKNLAEHEKQVNIQFLELDSPGLPTDDANGEFAAKDDGERDSSYLLVEEIA 700
            MC QN     S EE  + +E LLIYCKPV LYNI   R+  NPS+L RCL+YKI AK KR+ R  G+VVFNY+D  N L +TEV ED SCPFC M C  FKGL++HL SSHDLF +EF + ++YQ VN+SVK+++   E   G  D + + F  C+KPR R+++    + +++ + FL LDSP L     NG  A  +DG R   Y    E+A
Sbjct:    1 MCRQNCRAKSSPEEVISTDENLLIYCKPVRLYNIFHLRSLGNPSFLPRCLNYKIGAKRKRKSRSTGMVVFNYKDCNNTLQRTEVREDCSCPFCSMLCGSFKGLQFHLNSSHDLFEFEFKLLEEYQTVNVSVKLNSFIFE-EEGSDDDKFEPFSLCSKPRKRRQRGGRNNTRRLKVCFLPLDSPSLANGTENG-IALLNDGNRGLGYPEATELA 211          
BLAST of EY720769 vs. ExPASy Swiss-Prot
Match: EMF2_ARATH (Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana GN=EMF2 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.595e-34
Identity = 68/112 (60.71%), Postives = 87/112 (77.68%), Query Frame = 2
Query:  245 RLRPGIVVFNYRDYTNMLTKTEVTEDFSCPFCLMQCACFKGLRYHLCSSHDLFNYEFWVTDDYQAVNISVKIDTLTSEIVAGGVDPRLQTFFFCAKP-RSRKRKNLAEHEKQ 577
            RLR G VVFNYR Y N L KTEVTEDFSCPFCL++CA FKGLRYHL S+HDL N+EFWVT+++QAVN+S+K +T+ S++    VDP+ QTFFF +K  R R++K+     +Q
Sbjct:  298 RLRTGNVVFNYRYYNNKLQKTEVTEDFSCPFCLVKCASFKGLRYHLPSTHDLLNFEFWVTEEFQAVNVSLKTETMISKVNEDDVDPKQQTFFFSSKKFRRRRQKSQVRSSRQ 409          

HSP 2 Score: 87.0409 bits (214), Expect = 1.517e-16
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    8 PDFSAKSSICLNWSWIVDQMCHQNYCELLSAEEATAGEERLLIYCKPVELYNILRHRAQLNPSYLRRCLHYKIRAKHKRRLR 253
            P  S ++S C   S   +QMCH++    +S EE  A EE L  YCKPVELYNI++ RA  NP +L+RCLHYKI AKHKRR++
Sbjct:    5 PLVSRETSSC---SRSTEQMCHEDSRLRISEEEEIAAEESLAAYCKPVELYNIIQRRAIRNPLFLQRCLHYKIEAKHKRRIQ 83          
BLAST of EY720769 vs. ExPASy Swiss-Prot
Match: FIS2_ARATH (Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2 OS=Arabidopsis thaliana GN=FIS2 PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 9.162e-30
Identity = 75/186 (40.32%), Postives = 113/186 (60.75%), Query Frame = 2
Query:  119 EERLLIYCKPVELYNILRHRAQLNPSYLRRCLHYKIRAKHKRRLRPGIVV-FNYRDYTNMLT-KTEVTEDFSCPFCLMQCACFKGLRYHLCSSHDLFNYEFW--VTDDYQAVNISVKIDTLTSEIVAGGV-DPRLQTFFFCAKPRS-RKRKNLAEHEKQVNIQFLELDSPGLPTDDANGEFAAKDD 658
            +E ++ Y KPV +Y  L  R++ NP +LRR L Y I+AK K++   G  + FNYRD +N +T K EV E+FSCPFCL+ C   +GL+ HL SSHD F +EF+    D    V++SVK DT+   ++   V +P+L    FC+K R+ R++++ + + K++N+  +ELD   LP    N      DD
Sbjct:   64 DENIIKYIKPVAVYKKLETRSKNNPYFLRRSLKYIIQAKKKKKSNSGGKIRFNYRDVSNKMTLKAEVVENFSCPFCLIPCGGHEGLQLHLKSSHDAFKFEFYRAEKDHGPEVDVSVKSDTIKFGVLKDDVGNPQLSPLTFCSKNRNQRRQRDDSNNVKKLNVLLMELDLDDLPRGTENDSTHVNDD 249          
The following BLAST results are available for this feature:
BLAST of EY720769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
VRN2_ARATH3.956e-4948.36Polycomb group protein VERNALIZATION 2 OS=Arabidop... [more]
EMF2_ARATH3.595e-3460.71Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabi... [more]
FIS2_ARATH9.162e-3040.32Polycomb group protein FERTILIZATION-INDEPENDENT S... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-014-A10-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720769 ID=EY720769; Name=EY720769; organism=Citrus sinensis; type=EST; length=886bp
CACGCGTCCGGATTTCTCCGCGAAATCTTCGATTTGCTTGAATTGGAGTT
GGATTGTGGACCAGATGTGCCATCAAAATTATTGTGAGCTTCTTTCCGCA
GAAGAGGCAACTGCCGGTGAAGAGAGACTCTTAATATACTGCAAGCCTGT
CGAACTATACAATATTCTACGTCACCGTGCTCAACTTAATCCTTCATATC
TTCGAAGATGTTTGCATTACAAAATACGAGCAAAACACAAAAGGAGGTTG
AGGCCGGGAATCGTAGTTTTCAACTACAGGGACTATACCAACATGCTAAC
AAAGACTGAAGTAACTGAGGACTTCTCTTGTCCGTTTTGCTTGATGCAAT
GTGCGTGCTTCAAGGGTCTGCGGTATCATTTGTGCTCATCACATGATTTA
TTCAACTACGAGTTCTGGGTTACTGACGATTATCAGGCAGTGAACATCTC
TGTGAAAATTGATACACTGACATCTGAGATTGTAGCAGGTGGAGTAGACC
CACGGCTACAAACATTTTTCTTCTGCGCAAAGCCACGAAGTCGTAAGCGA
AAGAACCTTGCAGAGCATGAAAAACAAGTTAACATACAATTTCTGGAATT
GGACTCGCCGGGATTACCCACTGATGATGCAAATGGAGAGTTTGCTGCAA
AGGATGATGGTGAGAGGGATTCAAGTTATCTCCTAGTGGAAGAAATTGCC
AATGGAAGGGATGGAGGAATACCTCTGGTTTTATGGAGCAGATTGCTTTG
AAGGTGTGGCATCCAGTTTCAATGGGTCTGATGTACCAATGGCCTGGGCT
CATCTTCTATGGACCCTGAGTGTGTAAATCATTATCTCGGACTGATGCCG
TACCCCTGCTATGCCTGATGTGGAAAATTGGGAAGT
back to top