EY720762

Overview
NameEY720762
Unique NameEY720762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720762 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.808e-19
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   91 IPKNRTRLWLGTFDTXXXXXXXXXXXXXGLRGECAXINFPALKHHGAHVTGEFGDYKPLHASVDGKLRGCGEHLA 315
            +P+NRTRLWLGTFDT              LRG+ A +NFP L+H+G+H+ G+FG+YKPLH+SVD KL    + +A
Sbjct:  169 LPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGDFGEYKPLHSSVDAKLEAICKSMA 243          

HSP 2 Score: 30.8018 bits (68), Expect = 2.808e-19
Identity = 17/30 (56.67%), Postives = 19/30 (63.33%), Query Frame = 2
Query:   11 GVPVRESPFGPRVRRQRHWGKSVAEIGSPR 100
            GVP + +     VR QRHWGK VAEI  PR
Sbjct:  143 GVPSKPTKLYRGVR-QRHWGKWVAEIRLPR 171          
BLAST of EY720762 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 6.683e-13
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   91 IPKNRTRLWLGTFDTXXXXXXXXXXXXXGLRGECAXINFPALKHHGAHVTGEFGDYKPLHASVDGKL 291
            +P+NRTRLWLGTFDT              LRG+ A +NFPAL++       + G+Y P+ A+VD KL
Sbjct:  160 LPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFPALRYQTGSSPSDTGEYGPIQAAVDAKL 226          

HSP 2 Score: 30.4166 bits (67), Expect = 6.683e-13
Identity = 13/16 (81.25%), Postives = 13/16 (81.25%), Query Frame = 2
Query:   53 RQRHWGKSVAEIGSPR 100
            RQRHWGK VAEI  PR
Sbjct:  147 RQRHWGKWVAEIRLPR 162          
BLAST of EY720762 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 8.723e-13
Identity = 35/86 (40.70%), Postives = 46/86 (53.49%), Query Frame = 1
Query:   91 IPKNRTRLWLGTFDTXXXXXXXXXXXXXGLRGECAXINFPALKHHGAHVTGEFGDYKPLHASVDGKLRGCGEHLALGDEVQRGASE 348
            +PKNRTRLWLGTFDT              LRGE A +NFP  +H   +  G    + PLH+SVD KL+   + L   +++    SE
Sbjct:  110 LPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFPQFRHEDGYYGGG-SCFNPLHSSVDAKLQEICQSLRKTEDIDLPCSE 194          

HSP 2 Score: 29.261 bits (64), Expect = 8.723e-13
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 2
Query:   53 RQRHWGKSVAEIGSPR 100
            RQRHWGK VAEI  P+
Sbjct:   97 RQRHWGKWVAEIRLPK 112          
BLAST of EY720762 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 5.443e-12
Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   91 IPKNRTRLWLGTFDTXXXXXXXXXXXXXGLRGECAXINFPALKHHGAHVTGEFGDYKPLHASVDGKLRGCGEHLA 315
            +P+NRTRLWLGTFDT              LRG+ A +NFP L+H+         +Y+PL +SVD KL    ++LA
Sbjct:  100 LPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPDLRHN--------DEYQPLQSSVDAKLEAICQNLA 166          

HSP 2 Score: 30.4166 bits (67), Expect = 5.443e-12
Identity = 13/16 (81.25%), Postives = 13/16 (81.25%), Query Frame = 2
Query:   53 RQRHWGKSVAEIGSPR 100
            RQRHWGK VAEI  PR
Sbjct:   87 RQRHWGKWVAEIRLPR 102          
The following BLAST results are available for this feature:
BLAST of EY720762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RAP24_ARATH2.808e-1950.67Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF55_ARATH6.683e-1344.78Ethylene-responsive transcription factor ERF055 OS... [more]
ERF60_ARATH8.723e-1340.70Ethylene-responsive transcription factor ERF060 OS... [more]
ERF58_ARATH5.443e-1242.67Ethylene-responsive transcription factor ERF058 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-014-A01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720762 ID=EY720762; Name=EY720762; organism=Citrus sinensis; type=EST; length=891bp
GGTCGCCTGAGGGGTACCGGTCCGCGAATCCCCGTTCGGACCACGCGTCC
GGAGACAGAGGCACTGGGGCAAATCGGTTGCTGAAATTGGATCCCCAAGA
ACAGAACCAGGCTTTGGCTTGGCACTTTTGATACAGCTGAAGCAGCAGCT
TTGGCCTATGACCTAGCTGCTTATGGGCTAAGAGGAGAGTGTGCAANAAT
CAATTTCCCCGCACTCAAGCATCATGGAGCTCATGTCACTGGTGAATTTG
GTGATTACAAGCCTCTTCATGCTTCCGTGGATGGCAAATTGCGGGGGTGT
GGCGAGCACTTGGCTCTTGGCGACGAGGTGCAGAGGGGAGCATCGGAGGC
GGTGTAGGGGGGGGGGAGGGGGGGGGTGGTGGAGAGGCGAGTGTGATGGA
GGAGGGGAGGGTTGTCGGGTGATTGTTGGGGAGCGTGGGTGGAAGTTGTT
GATTAATGGAGAAGTGGGGTGGGTCTCTATGCGGGGCGAGTGCTGCGGGC
GTCGGGGGGGGGGGGCGTCGGGGCCGGGGAGGCAGCTGGGTCCGGAGTGG
CCACGGGCGAGCGACCACGAGGGAGGCGCGAAAGGCCGGCCGGGCAGCAG
GGCGAGGCGCGCGGGGGCGCCCGCGTGGCGTGGAGGGAGGGGCCAACGGA
CGAGGAGAGGCCAATACAGAAGAAGAGGCGCGCCCGAGCACCCTCGTACA
CGCGGCGGGGCGCGAGAGTGGGGGAGGGGGCGGGGAGGGGGCGGGGAGGG
GGGAGACAGACGTGGTCGAGGGGGGAGGGGAGCCGAAGGCGGAGAACCGG
CCGGGGCGGAAAAGGGTGCGGAGAGAGTCCCGAACCCAATAAAACACAAG
AAGAGGAGTTGTGTGGAGGGGGGGGGGAGTGGAGGAAGAGG
back to top