EY720761

Overview
NameEY720761
Unique NameEY720761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720761 vs. ExPASy Swiss-Prot
Match: CPSF3_HUMAN (Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 8.753e-70
Identity = 123/207 (59.42%), Postives = 157/207 (75.85%), Query Frame = 3
Query:   15 TRPDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNMPMYYASPLAKKCMAVYQTLLPSMNERIRPQFADSDAFKYKALAPSNSIDDLPDGRPADGDGSPG 635
            T  D+  SMD+IE ++FH+  EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P   PDI IIESTYG  +H+ R  RE RF + +H  +++GGR LIP +ALGRAQELLLILDEYW NHPE H++P+YYAS LAKKCMAVYQT + +MN++IR Q   ++ F +K ++   S+D   D  P+    SPG
Sbjct:  124 TETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPG 330          
BLAST of EY720761 vs. ExPASy Swiss-Prot
Match: CPSF3_BOVIN (Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 8.753e-70
Identity = 123/207 (59.42%), Postives = 157/207 (75.85%), Query Frame = 3
Query:   15 TRPDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNMPMYYASPLAKKCMAVYQTLLPSMNERIRPQFADSDAFKYKALAPSNSIDDLPDGRPADGDGSPG 635
            T  D+  SMD+IE ++FH+  EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P   PDI IIESTYG  +H+ R  RE RF + +H  +++GGR LIP +ALGRAQELLLILDEYW NHPE H++P+YYAS LAKKCMAVYQT + +MN++IR Q   ++ F +K ++   S+D   D  P+    SPG
Sbjct:  124 TETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPG 330          
BLAST of EY720761 vs. ExPASy Swiss-Prot
Match: CPSF3_MOUSE (Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cpsf3 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.950e-69
Identity = 123/207 (59.42%), Postives = 156/207 (75.36%), Query Frame = 3
Query:   15 TRPDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNMPMYYASPLAKKCMAVYQTLLPSMNERIRPQFADSDAFKYKALAPSNSIDDLPDGRPADGDGSPG 635
            T  D+  SMD+IE ++FH+  EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P   PDI IIESTYG  +H+ R  RE RF   +H  +++GGR LIP +ALGRAQELLLILDEYW NHPE H++P+YYAS LAKKCMAVYQT + +MN++IR Q   ++ F +K ++   S+D   D  P+    SPG
Sbjct:  124 TETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFWHTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPG 330          
BLAST of EY720761 vs. ExPASy Swiss-Prot
Match: CPSF3_DICDI (Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 6.076e-63
Identity = 113/206 (54.85%), Postives = 151/206 (73.30%), Query Frame = 3
Query:   18 RPDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNMPMYYASPLAKKCMAVYQTLLPSMNERIRPQFADSDAFKYKALAPSNSIDDLPDGRPADGDGSPG 635
            + D++RS+++IE + + Q VE NGIK  C+ AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL  AE P    D+ IIESTYGVQ+H+PR  RE+RFT  +H  + + G+ LIP +ALGRAQELLLILDEYW  +P+ H++P+YYAS LAKKCM VY+T +  MN+R+R QF  S+ F++K +     I+   D  P     SPG
Sbjct:  152 KSDLDRSLEKIEKVRYRQKVEHNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMGAETPPVKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVERNGKCLIPVFALGRAQELLLILDEYWIANPQLHHVPIYYASALAKKCMGVYRTYINMMNDRVRAQFDVSNPFEFKHIKNIKGIESFDDRGPCVFMASPG 357          
BLAST of EY720761 vs. ExPASy Swiss-Prot
Match: YSH1_SCHPO (Endoribonuclease ysh1 OS=Schizosaccharomyces pombe GN=ysh1 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.427e-61
Identity = 114/215 (53.02%), Postives = 151/215 (70.23%), Query Frame = 3
Query:   24 DINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNMPMYYASPLAKKCMAVYQTLLPSMNERIRPQFADSDAFKYKALAPSNSIDDLPDGRPADGDGSPGWATEWPAPTLL 668
            D+  + DRIE +D+H T+EV GIKF  Y AGHVLGA M+ V++AGV +L+TGDYSREEDRHL  AE+P   PD+ I ESTYG   HQPR  +E R  ++IHSTI  GGRVL+P +ALGRAQELLLILDEYW+NH +  ++P+YYAS LA+KCMA++QT +  MN+ IR  FA+ + F ++ +    +++   D  P+    SPG      + TLL
Sbjct:  152 DLLAAFDRIEAVDYHSTIEVEGIKFTPYHAGHVLGACMYFVEMAGVNILFTGDYSREEDRHLHVAEVPPKRPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRNGGRVLMPVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMMNDNIRKIFAERNPFIFRFVKSLRNLEKFDDIGPSVILASPGMLQNGVSRTLL 366          
BLAST of EY720761 vs. ExPASy Swiss-Prot
Match: YSH1_KLULA (Endoribonuclease YSH1 OS=Kluyveromyces lactis GN=YSH1 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.427e-61
Identity = 115/209 (55.02%), Postives = 154/209 (73.68%), Query Frame = 3
Query:   24 DINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPE---FHNMPMYYASPLAKKCMAVYQTLLPSMNERIRPQFADS--DAFKYKALAPSNSIDDLPDGRPADGDGSPG 635
            D+  S DRIE +D+H T+EVNGIKF  + AGHVLGAAMF ++IAGVRVL+TGDYSRE DRHL +AE+P  S D+ I+EST+G   H+PR  RER+ T +IH+ +S+GGRVL+P +ALGRAQE++LILDEYW NH E      +P++YAS LAKKCM+V+QT +  MN+ IR +F DS  + F +K ++   ++D+  D  P+    SPG
Sbjct:  136 DLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFKDSQTNPFIFKNISYLKNLDEFEDFGPSVMLASPG 344          
BLAST of EY720761 vs. ExPASy Swiss-Prot
Match: YSH1_YARLI (Endoribonuclease YSH1 OS=Yarrowia lipolytica GN=YSH1 PE=3 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 9.700e-61
Identity = 113/217 (52.07%), Postives = 150/217 (69.12%), Query Frame = 3
Query:   24 DINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNMPMYYASPLAKKCMAVYQTLLPSMNERIRPQFAD--SDAFKYKALAPSNSIDDLPDGRPADGDGSPGWATEWPAPTLL 668
            D+  S ++IE +D+H T+EVNG+KF  Y AGHVLGAAM+ +++ GV+VL+TGDYSREEDRHL  AE+P   PDI I ESTYG   H PR  RE+R T +IHST+ +GG+ L+P +ALGRAQE+LLILDEYW  HP+     +YYAS LAKKC+AVYQT +  MN+ IR +F D  ++ F++K +    ++D   D  P     SPG      + +LL
Sbjct:  153 DLTASFNKIETIDYHSTMEVNGVKFTAYHAGHVLGAAMYTIEVGGVKVLFTGDYSREEDRHLNQAEVPPMKPDILICESTYGTGTHLPRLEREQRLTGLIHSTLDKGGKCLLPVFALGRAQEILLILDEYWEAHPDLQEFSIYYASALAKKCIAVYQTYINMMNDNIRRRFRDQKTNPFRFKYIKNIKNLDRFDDMGPCVMVASPGMLQSGVSRSLL 369          
BLAST of EY720761 vs. ExPASy Swiss-Prot
Match: YSH1_ASHGO (Endoribonuclease YSH1 OS=Ashbya gossypii GN=YSH1 PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.700e-61
Identity = 113/212 (53.30%), Postives = 156/212 (73.58%), Query Frame = 3
Query:   15 TRPDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPE---FHNMPMYYASPLAKKCMAVYQTLLPSMNERIRPQFADS--DAFKYKALAPSNSIDDLPDGRPADGDGSPG 635
            T  D+  S DRIE +D+H T++VNGIKF  Y AGHVLGAAMF V+IAG+R+L+TGDYSRE DRHL +AE+P    DI I+EST+G   H+PR  +E++ T +IH+T+S+GGRVL+P +ALGRAQE++LILDEYWS H E      +P++YAS LA+KCM+V+QT +  MN++IR +F DS  + F +K ++   ++D+  D  P+    SPG
Sbjct:  130 TDEDLAESFDRIETVDYHSTIDVNGIKFTAYHAGHVLGAAMFQVEIAGLRILFTGDYSRELDRHLNSAEIPTLPSDILIVESTFGTATHEPRTSKEKKLTQLIHTTVSKGGRVLLPVFALGRAQEIMLILDEYWSQHAEQLGNGQVPIFYASNLARKCMSVFQTYVNMMNDKIRKKFRDSQTNPFIFKNISYLKNLDEFQDFGPSVMLASPG 341          
BLAST of EY720761 vs. ExPASy Swiss-Prot
Match: YSH1_USTMA (Endoribonuclease YSH1 OS=Ustilago maydis GN=YSH1 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.120e-59
Identity = 111/203 (54.68%), Postives = 146/203 (71.92%), Query Frame = 3
Query:   36 SMDRIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNMPMYYASPLAKKCMAVYQTLLPSMNERIRPQFADSD-AFKYKALAPSNSIDDLPDGRPADGDGSPGW 638
            S  +IE +DFHQ V +  G++F  Y AGHVLGA MF+++IAG+R+LYTGD+SREEDRHL  AE+P   PD+ I ESTYG Q H+PR  +E RFT  IH  I +GGRVL+P + LGRAQELLL+LDEYW+ HPE H++P+YYAS LAKKC++VYQT + +MN+ IR +F   D  F +K ++   S++   D  P     SPG+
Sbjct:  146 SWRQIEAVDFHQDVSIAGGLRFTSYHAGHVLGACMFLIEIAGLRILYTGDFSREEDRHLVQAEIPPVKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRGGRVLLPVFVLGRAQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTYIHTMNDHIRTRFNRRDNPFVFKHISNLRSLEKFEDRGPCVMMASPGF 348          
BLAST of EY720761 vs. ExPASy Swiss-Prot
Match: YSH1_CANGA (Endoribonuclease YSH1 OS=Candida glabrata GN=YSH1 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.075e-59
Identity = 111/209 (53.11%), Postives = 154/209 (73.68%), Query Frame = 3
Query:   24 DINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPE---FHNMPMYYASPLAKKCMAVYQTLLPSMNERIRPQFADS--DAFKYKALAPSNSIDDLPDGRPADGDGSPG 635
            D+  S D+IE +D+H  ++VNGIKF  + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +AE+P    DI I+EST+G   H+PR  RE++ T +IHST+++GGRVL+P +ALGRAQEL+LILDEYWS H E    + +P++YAS LA+KC++V+QT +  MN+ IR +F DS  + F +K +A   ++D+  D  P+    SPG
Sbjct:  131 DLIESFDKIETIDYHSMIDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREIDRHLNSAEVPPLPSDILIVESTFGTATHEPRLHREKKLTQLIHSTVNKGGRVLMPVFALGRAQELMLILDEYWSQHKEELGSNQIPIFYASNLARKCLSVFQTYVNMMNDNIRKKFRDSQTNPFIFKNIAYIKNLDEFQDFGPSVMLASPG 339          
The following BLAST results are available for this feature:
BLAST of EY720761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
CPSF3_HUMAN8.753e-7059.42Cleavage and polyadenylation specificity factor su... [more]
CPSF3_BOVIN8.753e-7059.42Cleavage and polyadenylation specificity factor su... [more]
CPSF3_MOUSE1.950e-6959.42Cleavage and polyadenylation specificity factor su... [more]
CPSF3_DICDI6.076e-6354.85Cleavage and polyadenylation specificity factor su... [more]
YSH1_SCHPO7.427e-6153.02Endoribonuclease ysh1 OS=Schizosaccharomyces pombe... [more]
YSH1_KLULA7.427e-6155.02Endoribonuclease YSH1 OS=Kluyveromyces lactis GN=Y... [more]
YSH1_YARLI9.700e-6152.07Endoribonuclease YSH1 OS=Yarrowia lipolytica GN=YS... [more]
YSH1_ASHGO9.700e-6153.30Endoribonuclease YSH1 OS=Ashbya gossypii GN=YSH1 P... [more]
YSH1_USTMA3.120e-5954.68Endoribonuclease YSH1 OS=Ustilago maydis GN=YSH1 P... [more]
YSH1_CANGA4.075e-5953.11Endoribonuclease YSH1 OS=Candida glabrata GN=YSH1 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-013-H11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720761 ID=EY720761; Name=EY720761; organism=Citrus sinensis; type=EST; length=871bp
CCACGCGTCCGCCCACGCGTCCGGACATTAATCGCTCCATGGATAGAATT
GAGGTTCTTGATTTCCATCAGACAGTGGAAGTGAATGGCATTAAATTCTG
GTGTTATACCGCTGGCCATGTCCTGGGTGCTGCCATGTTTATGGTTGACA
TTGCTGGTGTTCGAGTACTCTACACTGGAGATTATTCTCGTGAAGAGGAC
CGACATCTCCGTGCTGCTGAGCTTCCTCAGTTCTCTCCTGACATTTGTAT
AATCGAATCCACTTATGGTGTTCAGCTTCATCAACCACGGAACATTCGTG
AGAGGCGCTTCACTGATGTGATTCACTCAACTATTTCTCAAGGAGGTCGT
GTTCTAATTCCGGCATATGCCCTTGGCCGAGCACAGGAGCTGCTGCTGAT
CCTTGATGAGTACTGGTCCAACCATCCGGAGTTCCATAATATGCCAATGT
ATTATGCTTCTCCACTTGCCAAAAAGTGCATGGCTGTCTATCAGACCTTA
CTCCCTTCCATGAATGAGAGAATCCGGCCCCAGTTTGCCGACTCCGATGC
CTTCAAATACAAGGCACTTGCACCATCAAATAGCATTGATGACCTACCTG
ATGGCCGCCCCGCGGATGGGGATGGCAGCCCCGGGTGGGCCACCGAGTGG
CCAGCCCCCACACTTCTTCGATATTCGGGCGGCCTAATAACAACACGGCT
CGTGTTAAACACACCACACCGCCCAACGAAAGATAGCGCCACCGTGGGGT
GGAAACCGAACAACATCCACCCCTCAAAGGGAATTACGATACTCTAACAT
GGCAGGCGCGTAATAACCCTCCCTCCGCCGACCACTGAACCCCCCAACAC
CTCTACGTAAAGCCCGCCCCC
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