EY720760

Overview
NameEY720760
Unique NameEY720760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720760 vs. ExPASy Swiss-Prot
Match: PGKH_ARATH (Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.593e-15
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  332 ASRRLGFSAS-GPLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADPKGKNVSVRAGFDGALDDKQNLTDDTRSGAAGPS 577
            ++RRLGFSA      + HVAS++ S++ KG R V++MAKKSVG+L+  D KGK V VRA  +  LDD QN+TDDTR  AA P+
Sbjct:   38 SARRLGFSAVVDSRFSVHVASKVHSVRGKGARGVITMAKKSVGDLNSVDLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPT 120          
BLAST of EY720760 vs. ExPASy Swiss-Prot
Match: PGKH_TOBAC (Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.005e-14
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  338 RRLGFS--ASGPLLTCHVASRLSSIKT--KGTRAVVSMAKKSVGELSGADPKGKNVSVRAGFDGALDDKQNLTDDTRSGAAGPS 577
            RRLGF+  A+  L T HVA++L S+K+  K  R V SMAKKSVG+L+ A+ KGK V VRA  +  LDD QN+TDDTR  AA P+
Sbjct:   39 RRLGFAGAAADSLFTNHVATKLRSLKSSSKPIRGVASMAKKSVGDLTAAELKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPT 122          
BLAST of EY720760 vs. ExPASy Swiss-Prot
Match: PGKH_WHEAT (Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.491e-13
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  335 SRRLGFSASG-PLLTCHVASRLSSIKT-KGTRAVVSMAKKSVGELSGADPKGKNVSVRAGFDGALDDKQNLTDDTRSGAAGPS 577
            +R L F+A   P L  HVASR  +    +GTRAV +MAKKSVG+L+ AD +GK V VRA  +  LDD QN+TDDTR  AA P+
Sbjct:   37 ARSLAFAAGADPRLAVHVASRCRAASAARGTRAVATMAKKSVGDLTAADLEGKRVLVRADLNVPLDDNQNITDDTRIRAAIPT 119          
BLAST of EY720760 vs. ExPASy Swiss-Prot
Match: PGKH_SPIOL (Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.797e-12
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  362 GPLLTCHVASRLSSIKTKGT---RAVVSMAKKSVGELSGADPKGKNVSVRAGFDGALDDKQNLTDDTRSGAAGPS 577
            G   + HV S+++S K++ T   R V SMAKKSVG+L+ AD KGK V VRA  +  LDD QN+TDDTR  AA P+
Sbjct:    1 GASFSLHVLSKINSYKSQSTKPIRGVASMAKKSVGDLTSADLKGKKVFVRADLNVPLDDSQNITDDTRIRAAIPT 75          
The following BLAST results are available for this feature:
BLAST of EY720760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PGKH_ARATH1.593e-1554.22Phosphoglycerate kinase, chloroplastic OS=Arabidop... [more]
PGKH_TOBAC3.005e-1455.95Phosphoglycerate kinase, chloroplastic OS=Nicotian... [more]
PGKH_WHEAT1.491e-1354.22Phosphoglycerate kinase, chloroplastic OS=Triticum... [more]
PGKH_SPIOL4.797e-1253.33Phosphoglycerate kinase, chloroplastic (Fragment) ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-013-H10-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720760 ID=EY720760; Name=EY720760; organism=Citrus sinensis; type=EST; length=861bp
CACGCGTCCGCGATCATCTTGGACCTCTCCTCAACGATAAGAGAAATCTC
CAATATCACCCAATCGTGTTGCCTCCTCGCTCTTCACGTCCACATCTTCT
TCATCTTCCCCACACATTTTCCTTCCCCATTCTTCAATCAAACCAAAACC
CACTTCCCATTTCCCCACTTTGTCGACAAAGTTTCAATCTTTTGCGCCTT
TACTACGCCCCTCCACTCCCGCCACATCAATGGCTTCAGCCACCGCTCCC
ACTACTTTCTCTCTCGTCAAAACCGCCGCAAGTTCATCCCTTTCTTCCCC
ACGCGCCTCCTTCCTGCGCATGCCCACTTCAGCATCCCGCAGGCTGGGGT
TCTCCGCATCCGGACCGCTGCTGACCTGCCATGTGGCGTCGAGGCTGAGC
TCGATTAAGACGAAGGGCACTCGTGCGGTGGTGTCGATGGCGAAGAAGAG
CGTGGGGGAGTTGAGTGGAGCTGATCCGAAAGGGAAGAACGTGTCTGTCA
GAGCTGGCTTCGATGGCGCTTTGGATGACAAGCAGAACCTTACTGATGAT
ACTAGAAGCGGAGCGGCTGGTCCCAGCAGGGAGGGTGGGGAGTGAACGGG
GGGCGGAAGTCAGACGTGCAAGCCGCTTGGGGAAGATCGAACGGGGGGAG
GTCCGACACGCCGCGGGGGAGCCTCCGGTGCATGGGAGGTTGGGAGTGGG
TGGGGATTGTGGTTGGGAGTGGAGATGAGTGGGTGGGGCCGGCGCGCGAA
CGAACCGCAGCCTGCACCTGCGGAACGCGGCGTTGAAGCGGGGAGGGTGC
GGGGGGGGGTGAGAATTAGGGGGGTAAAGTGAGAGAGTGCGGGGGGCGAA
GAGAGGGTCCG
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