EY720648

Overview
NameEY720648
Unique NameEY720648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720648 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 7.578e-53
Identity = 98/124 (79.03%), Postives = 109/124 (87.90%), Query Frame = 2
Query:   35 MVIQQQKQTPGEILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLCNTPVADDKTAVGVGTV 406
            MV+ +        ++STFASRYVR ++PRFKMPDNS+PKEAAYQ+INDELMLDGNPRLNLASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVNMIAHL N P+ D +TAVGVGTV
Sbjct:    1 MVLSKTVSQSDVSIHSTFASRYVRTSLPRFKMPDNSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMDSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEDGETAVGVGTV 124          

HSP 2 Score: 23.483 bits (49), Expect = 7.578e-53
Identity = 10/23 (43.48%), Postives = 13/23 (56.52%), Query Frame = 1
Query:  430 LAGLGVRRKWGRRRKEAGHA*DE 498
            LAGL  +RKW  + K  G   D+
Sbjct:  132 LAGLAFKRKWQNKMKAQGKPCDK 154          
BLAST of EY720648 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 7.578e-53
Identity = 96/124 (77.42%), Postives = 109/124 (87.90%), Query Frame = 2
Query:   35 MVIQQQKQTPGEILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLCNTPVADDKTAVGVGTV 406
            MV+          ++STFASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNLASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHL N P+ + +TAVGVGTV
Sbjct:    1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTV 124          

HSP 2 Score: 25.7942 bits (55), Expect = 7.578e-53
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  430 LAGLGVRRKWGRRRKEAGHA*DE 498
            LAGL  +RKW  +RK  G   D+
Sbjct:  132 LAGLAFKRKWQNKRKAEGKPVDK 154          
BLAST of EY720648 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.824e-51
Identity = 92/113 (81.42%), Postives = 104/113 (92.04%), Query Frame = 2
Query:   68 EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLCNTPVADDKTAVGVGTV 406
            E L+ TFASRYV+  +P+FKMP  SMPKEAAYQ++NDELMLDGNPRLNLASFV+TWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNM+AHL + PV DD+TAVGVGTV
Sbjct:   13 ESLHCTFASRYVQEPLPKFKMPKKSMPKEAAYQIVNDELMLDGNPRLNLASFVSTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMLAHLFHAPVGDDETAVGVGTV 125          

HSP 2 Score: 25.409 bits (54), Expect = 1.824e-51
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  430 LAGLGVRRKWGRRRKEAGHA*DE 498
            LAGL  +RKW  +RK  G   D+
Sbjct:  133 LAGLAFKRKWQSKRKAEGKPFDK 155          
BLAST of EY720648 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 4.671e-46
Identity = 84/116 (72.41%), Postives = 100/116 (86.21%), Query Frame = 2
Query:   59 TPGEILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLCNTPVADDKTAVGVGTV 406
            T  E + + F SRYVR  +P++++ +NS+PK+AAYQ+I DELMLDGNPRLNLASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVN+IA L N P+ + +TAVGVGTV
Sbjct:    8 TNDESVCTMFGSRYVRTTLPKYEIGENSIPKDAAYQIIKDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEESETAVGVGTV 123          

HSP 2 Score: 25.7942 bits (55), Expect = 4.671e-46
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  430 LAGLGVRRKWGRRRKEAGHA*DE 498
            LAGL  +RKW  +RK  G   D+
Sbjct:  131 LAGLAFKRKWQNKRKAEGKPYDK 153          
BLAST of EY720648 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.843e-21
Identity = 49/124 (39.52%), Postives = 77/124 (62.10%), Query Frame = 2
Query:   35 MVIQQQKQTPGEILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLCNTPVADDKTAVGVGTV 406
            M+  ++ +   E L   F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KL+  ++ KN +D  EYP TTE++NRCVNMIA L N   ++ +  +G  T+
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTI 122          
BLAST of EY720648 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.843e-21
Identity = 49/124 (39.52%), Postives = 77/124 (62.10%), Query Frame = 2
Query:   35 MVIQQQKQTPGEILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLCNTPVADDKTAVGVGTV 406
            M+  ++ +   E L   F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KL+  ++ KN +D  EYP TTE++NRCVNMIA L N   ++ +  +G  T+
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTI 122          
BLAST of EY720648 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.993e-20
Identity = 47/113 (41.59%), Postives = 69/113 (61.06%), Query Frame = 2
Query:   68 EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLCNTPVADDKTAVGVGTV 406
            E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L + P   +  AVG  T+
Sbjct:   12 ELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTI 124          
BLAST of EY720648 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.993e-20
Identity = 47/113 (41.59%), Postives = 69/113 (61.06%), Query Frame = 2
Query:   68 EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLCNTPVADDKTAVGVGTV 406
            E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L + P   +  AVG  T+
Sbjct:   12 ELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTI 124          
BLAST of EY720648 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.993e-20
Identity = 47/113 (41.59%), Postives = 69/113 (61.06%), Query Frame = 2
Query:   68 EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLCNTPVADDKTAVGVGTV 406
            E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L + P   +  AVG  T+
Sbjct:   12 ELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDDNVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTI 124          
BLAST of EY720648 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.993e-20
Identity = 47/113 (41.59%), Postives = 69/113 (61.06%), Query Frame = 2
Query:   68 EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLCNTPVADDKTAVGVGTV 406
            E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L + P   +  AVG  T+
Sbjct:   12 ELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTI 124          
The following BLAST results are available for this feature:
BLAST of EY720648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCE_PETHY7.578e-5379.03Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE1_ARATH7.578e-5377.42Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE_SOLLC1.824e-5181.42Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE2_ARATH4.671e-4672.41Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE_LACLM4.843e-2139.52Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA4.843e-2139.52Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEB_SHIFL6.993e-2041.59Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI6.993e-2041.59Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECOL66.993e-2041.59Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEB_ECO576.993e-2041.59Glutamate decarboxylase beta OS=Escherichia coli O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-012-E02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720648 ID=EY720648; Name=EY720648; organism=Citrus sinensis; type=EST; length=925bp
CACGCCGTCCGCTCTGCACAAAACAAAAACAAAAATGGTGATTCAACAAC
AGAAACAGACTCCAGGGGAGATTTTGAACTCCACATTTGCTTCAAGATAT
GTCCGTGCTGCTATTCCCAGATTCAAGATGCCAGATAATTCAATGCCAAA
GGAGGCAGCCTATCAGGTAATAAATGATGAGCTGATGTTAGATGGAAATC
CAAGGCTGAACTTGGCATCTTTTGTGACCACTTGGATGGAGCCCGAGTGT
GATAAGCTTGTCATGGCTTCGATTAATAAAAACTATGTTGACATGGATGA
ATACCCTGTAACCACAGAGCTCCAGAATCGGTGTGTGAATATGATTGCCC
ACCTATGTAATACTCCAGTTGCGGATGACAAGACTGCAGTGGGCGTGGGG
ACTGTACGGTTCATCAGAGGCGATGATGCTTGGCTGGCTTGGGGGTGAGA
AGGAAGTGGGGGCGGAGGAGAAAAGAGGCCGGGCACGCCTAGGATGAGGG
CGGGATGGGGGCGGGGATCGTAGTTTGGGGGTGTGGGGGGAGGAGGTGGG
GGGCGAGGGTGGGGGGTGGGCGGGGGGGGGGGGGCGCGCGGGGGGGGTGG
GCGGGGGTGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGAGGTGGGGGGAC
GGGGGGGTGGGGGGGGGGGGGGGGTGGGTGGGTAGGAGTCCGGAGGTGGG
TGGAGGGGTGGGGTCCGCTATGGGGGGGTTGTGCGGGGGGGGGGGGGGGT
CGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGAGTGGGTGGCGGT
AGGGAGGGAGGAGGGGGGGAGGCGGGGGGGGGAGGGGGGGGCGGAGGGGG
GAGAGCGGGCGGGGGGGGGGAAGGGGGGGGGGGGGGGAGGGGGAGGGCTG
GGGGCGGGTGGGAGAGGGGTAGGGA
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