EY720644

Overview
NameEY720644
Unique NameEY720644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720644_ssr264 microsatellite EY720644_ssr264:264..278. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY720644 vs. ExPASy Swiss-Prot
Match: TRPE_ARATH (Anthranilate synthase component I-1, chloroplastic OS=Arabidopsis thaliana GN=ASA1 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.864e-54
Identity = 114/231 (49.35%), Postives = 152/231 (65.80%), Query Frame = 3
Query:   99 MNAGAAATSMQSLSFSNRLVPP--SHRLSLVPVTVTRINLPKSA--ATFSTVKCCVSRQXXXXXXXXXXXXXKLASDALGFSEASKRANLVPLYRCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVIVKDNNVTIMDHEKGSLXEEVVDDPMEIPREISEDWK--PQIIEELSEAFCGGWGWLFLHMIPFAYLKKKNLTCAKGPNDD 773
            M++     +MQ+L+FS RL+P   S  LS   VTVT  +   SA   +F ++KC                   + SD    ++ASK  NL+P+YRCIFSD LTPV+AYRCLV+EDDREAPSFLFESVEPG ++S+VGRYSVVGAQP ME++ K+N V +MDH   ++ EE V+DPMEIPR+ISE W   PQ++++L +AFCGGW   F +     Y++K+ L  +K P DD
Sbjct:    1 MSSSMNVATMQALTFSRRLLPSVASRYLSSSSVTVTGYSGRSSAYAPSFRSIKCV-----------SVSPEASIVSDTKKLADASKSTNLIPIYRCIFSDQLTPVLAYRCLVKEDDREAPSFLFESVEPGSQMSSVGRYSVVGAQPAMEIVAKENKVIVMDHNNETMTEEFVEDPMEIPRKISEKWNPDPQLVQDLPDAFCGGWVGFFSY-DTVRYVEKRKLPFSKAPEDD 219          
BLAST of EY720644 vs. ExPASy Swiss-Prot
Match: TRPX_ARATH (Anthranilate synthase component I-2, chloroplastic OS=Arabidopsis thaliana GN=ASA2 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.996e-48
Identity = 90/149 (60.40%), Postives = 114/149 (76.51%), Query Frame = 3
Query:  327 FSEASKRANLVPLYRCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVIVKDNNVTIMDHEKGSLXEEVVDDPMEIPREISEDWKPQIIEELSEAFCGGWGWLFLHMIPFAYLKKKNLTCAKGPNDD 773
            F +AS++ NLVPL+RC+FSDHLTP++AYRCLV+EDDR+APSFLFESVEPG + SN+GRYSVVGAQP +E++ K N VT+MDH      EE VDDPM +P++I E+W PQ I+EL EAFCGGW   F +     Y++KK L  +  P DD
Sbjct:   85 FKKASEKGNLVPLFRCVFSDHLTPILAYRCLVKEDDRDAPSFLFESVEPGSQSSNIGRYSVVGAQPTIEIVAKGNVVTVMDHGASLRTEEEVDDPMMVPQKIMEEWNPQGIDELPEAFCGGWVGYFSY-DTVRYVEKKKLPFSNAPEDD 232          
The following BLAST results are available for this feature:
BLAST of EY720644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRPE_ARATH1.864e-5449.35Anthranilate synthase component I-1, chloroplastic... [more]
TRPX_ARATH1.996e-4860.40Anthranilate synthase component I-2, chloroplastic... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-012-D07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720644 ID=EY720644; Name=EY720644; organism=Citrus sinensis; type=EST; length=898bp
CACGCGTCCGCAAAAACAAAATCCATAATCTTTTGTTTTGAGCTTCAACC
GGAGACTGACGCTATCGATTTTTGAGTTATTTATTTGTTCTTGTAGCGAT
GAATGCAGGCGCAGCGGCAACATCAATGCAATCCCTAAGCTTCTCCAACC
GCTTGGTCCCACCCAGTCACCGGCTGTCTCTTGTTCCGGTCACCGTCACC
CGCATTAACCTCCCCAAGTCCGCAGCAACTTTCAGTACAGTCAAGTGCTG
CGTTTCTCGCCAGACCACCACCACCACCAGCACCGCCACCGCCACTGCTA
CTAAGTTAGCGAGTGATGCATTAGGATTTAGTGAAGCTTCCAAAAGGGCA
AATTTGGTACCCTTATACCGTTGCATATTCTCGGACCACCTTACTCCGGT
GGTTGCATATCGGTGTTTGGTTCAAGAAGATGACAGAGAGGCTCCGAGTT
TTTTATTTGAATCAGTGGAGCCCGGTGTTCGGGTTTCAAATGTTGGGAGG
TATAGTGTGGTTGGAGCTCAGCCTGTGATGGAAGTTATCGTGAAAGATAA
TAATGTTACAATAATGGATCATGAGAAAGGGAGCTTANTCGAGGAGGTTG
TNGATGATCCGATGGAGATTCCCAGAGAAATTTCCGAGGATTGGAAGCCT
CAAATAATCGAGGAACTTTCTGAAGCTTTTTGCGGTGGTTGGGGTTGGTT
ATTTCTCCATATGATACCGTTCGCCTATTTGAAAAAGAAAAACCTAACTT
GCGCAAAGGGCCCCAATGATGATGGAAAGTCTGGCAGATTGTGTTCTGAG
GCACATTAGAAAGGGTGGTGGTTTTGGGCGACGGGGGGAACAAACGTAAG
GGTGTTAGAGGGGGTGGGGGGCATCAGCAGTCCTCGGGCCAGAGGCGC
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