EY720641

Overview
NameEY720641
Unique NameEY720641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720641_ssr36 microsatellite EY720641_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY720641 vs. ExPASy Swiss-Prot
Match: CALR_RICCO (Calreticulin OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 2.117e-95
Identity = 165/209 (78.95%), Postives = 179/209 (85.65%), Query Frame = 1
Query:   88 VFFEERFDDGWESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDHAEKHLVAC----TLIGISSLQNHQGS*GQKPEYWDEKNICP 702
            VFFEERF+DGWE++WVKSDWKKDENTAGEWNYT+GKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS   DQKKFGGDTPYSIMFGPDICGYSTKKVHAIL YN TN LIKKEVPCETDQLTHVYT ++RPDATYSILID+ EK   +      L+    +++ +    +KPE WDEK   P
Sbjct:   22 VFFEERFEDGWENRWVKSDWKKDENTAGEWNYTSGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSSSTDQKKFGGDTPYSIMFGPDICGYSTKKVHAILNYNDTNHLIKKEVPCETDQLTHVYTLVIRPDATYSILIDNVEKQTGSLYTDWDLLPPKKIKDPE---AKKPEDWDEKEYIP 227          
BLAST of EY720641 vs. ExPASy Swiss-Prot
Match: CALR_BETVU (Calreticulin OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 6.810e-94
Identity = 163/209 (77.99%), Postives = 178/209 (85.17%), Query Frame = 1
Query:   88 VFFEERFDDGWESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDHAEKHLVAC----TLIGISSLQNHQGS*GQKPEYWDEKNICP 702
            VFFEERF+DGWE +WVKS+WKKDE+ AGEWNYT+GKWNGD NDKGIQTSEDYRFYAISAEFPEFSNKD TLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAI  YN TN LIKK+VPCETDQLTHVYTFILRPDATYSILID+ EK   +      L+    +++ +    +KPE WD+K   P
Sbjct:   27 VFFEERFEDGWEKRWVKSEWKKDESMAGEWNYTSGKWNGDANDKGIQTSEDYRFYAISAEFPEFSNKDNTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAIFNYNDTNHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNQEKQTGSLYTDWDLLPAKKIKDPE---AKKPEDWDDKEFIP 232          
BLAST of EY720641 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.517e-93
Identity = 160/209 (76.56%), Postives = 180/209 (86.12%), Query Frame = 1
Query:   88 VFFEERFDDGWESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDHAEKHLVAC----TLIGISSLQNHQGS*GQKPEYWDEKNICP 702
            VFFEERF+DGW+ +WV S+WKKDEN AGEWNYT+GKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGY+KLLSG+VDQKKFGGDTPYSIMFGPDICGYSTKKVHAIL YN TN LIKK+VPCETDQLTHVYTFI+RPDATYSILID+ EK   +      L+    +++ +    +KPE W+++   P
Sbjct:   26 VFFEERFEDGWDKRWVTSEWKKDENLAGEWNYTSGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYIKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILNYNNTNNLIKKDVPCETDQLTHVYTFIIRPDATYSILIDNLEKQTGSLYSDWDLLPAKKIKDPE---AKKPEDWEDQEYIP 231          
BLAST of EY720641 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 4.414e-93
Identity = 164/205 (80.00%), Postives = 178/205 (86.83%), Query Frame = 1
Query:   88 VFFEERFDDGWESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDHAEKHLVAC----TLIGISSLQNHQGS*GQKPEYWDEK 690
            VFFEE F+DGWES+WVKS+WKKDEN AGEWN+T+GKWNGD NDKGIQTSEDYRFYAISAEFPEFSNK K LVFQFSVKHEQKLDCGGGYMKLLSG+VDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYN TN LIKKEVPCETDQLTHVYTFILRPDATYSILID+ EK   +      L+   ++++      +KPE WDEK
Sbjct:   29 VFFEESFNDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDANDKGIQTSEDYRFYAISAEFPEFSNKGKNLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNDTNHLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPS---AKKPEDWDEK 230          
BLAST of EY720641 vs. ExPASy Swiss-Prot
Match: CALR1_ARATH (Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 9.833e-93
Identity = 161/209 (77.03%), Postives = 177/209 (84.69%), Query Frame = 1
Query:   88 VFFEERFDDGWESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDHAEKHLVAC----TLIGISSLQNHQGS*GQKPEYWDEKNICP 702
            V FEE+F+DGWE +WVKSDWKKD+NTAGEW +TAG W+GD NDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS +VDQ KFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTN LIKKEVPCETDQLTHVYTF+LRPDATYSILID+ EK   +      L+    +++      +KPE WD+K   P
Sbjct:   24 VIFEEKFEDGWEKRWVKSDWKKDDNTAGEWKHTAGNWSGDANDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSDDVDQTKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNHLIKKEVPCETDQLTHVYTFVLRPDATYSILIDNVEKQTGSLYSDWDLLPAKKIKDPS---AKKPEDWDDKEYIP 229          
BLAST of EY720641 vs. ExPASy Swiss-Prot
Match: CALR2_ARATH (Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3)

HSP 1 Score: 337.806 bits (865), Expect = 4.880e-92
Identity = 161/205 (78.54%), Postives = 177/205 (86.34%), Query Frame = 1
Query:   88 VFFEERFDDGWESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDHAEKHLVAC----TLIGISSLQNHQGS*GQKPEYWDEK 690
            V FEERFDDGWE++WVKS+WKKD+NTAGEW +TAG W+GD NDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSG+VDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYN  N LIKK+VPCETDQLTHVYTFILRPDATYSILID+ EK   +      L+    +++      +KPE WDE+
Sbjct:   24 VIFEERFDDGWENRWVKSEWKKDDNTAGEWKHTAGNWSGDANDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNEANHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYSDWDLLPPKKIKDPS---AKKPEDWDEQ 225          
BLAST of EY720641 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.422e-91
Identity = 161/206 (78.16%), Postives = 176/206 (85.44%), Query Frame = 1
Query:   88 VFFEERFDDGWESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDHAEKHLVAC-TLIGISSLQNHQGS*GQKPEYWDEKNICP 702
            VFFEERF+DGWES+WVKSDWK+DEN AGEWN+T+GKWNGD NDKGIQTSEDYRFYAISA FPEFSNK KTLVFQFSVKHEQKLDCGGGYMKLLSG+VDQKKFGGDTPYSIMFGPDICGYSTKKVHAILT   TN LIKK+VPCETDQLTHVYTFILRPDA+YSILID+ EK   +  T   I   +  +    +KPE W++K   P
Sbjct:   24 VFFEERFEDGWESKWVKSDWKRDENMAGEWNFTSGKWNGDANDKGIQTSEDYRFYAISAAFPEFSNKGKTLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTKGETNHLIKKDVPCETDQLTHVYTFILRPDASYSILIDNVEKQSGSVYTDWDILPPKQIKDPEAKKPEDWEDKEYIP 229          
BLAST of EY720641 vs. ExPASy Swiss-Prot
Match: CALR_ORYSJ (Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2)

HSP 1 Score: 323.168 bits (827), Expect = 1.244e-87
Identity = 150/209 (71.77%), Postives = 174/209 (83.25%), Query Frame = 1
Query:   88 VFFEERFDDGWESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDHAEKHLVAC----TLIGISSLQNHQGS*GQKPEYWDEKNICP 702
            VFF+E+F+DGWES+WVKS+WKKDEN AGEWN+T+GKWNGDP DKGIQTSEDYRFYAISAE+PEFSNKDKTLV QFSVKHEQKLDCGGGY+KLL G+VDQKKFGGDTPYSIMFGPDICGYSTKKVH I T N  N LIKK+VPCETDQL+HVYT I+ PDATY+ILID+ EK   +      ++    +++ +    +KPE WD+K   P
Sbjct:   31 VFFQEKFEDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDPEDKGIQTSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHTIFTKNDKNHLIKKDVPCETDQLSHVYTLIIHPDATYTILIDNVEKQSGSIYEHWDILPPKQIKDPE---AKKPEDWDDKEYIP 236          
BLAST of EY720641 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 2.428e-83
Identity = 146/209 (69.86%), Postives = 171/209 (81.82%), Query Frame = 1
Query:   88 VFFEERFDDGWESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDHAEKHLVAC----TLIGISSLQNHQGS*GQKPEYWDEKNICP 702
            VFF+E+F+DGWES+WVKS+WKKDEN AGEWN+T+GKWNGD  DKGIQTSEDYRFYAISAE+PEFSNKDKTLV QFSVKHEQKLDCGGGY+KLL G+VDQK  GGDT YSI+  PDI  YSTKKVH ILT +G N LIKK+VPC+TDQLTHVYTFI+RPDATYSILID+ EKH  +      ++    +++ +    +KPE WD+K   P
Sbjct:   27 VFFQEKFEDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDAEDKGIQTSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKTLGGDTSYSIISRPDISRYSTKKVHTILTKDGKNHLIKKDVPCQTDQLTHVYTFIIRPDATYSILIDNEEKHTGSIYEHWDILPPKKIKDPE---AKKPEDWDDKEYIP 232          
BLAST of EY720641 vs. ExPASy Swiss-Prot
Match: CALR3_ARATH (Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 8.169e-66
Identity = 116/202 (57.43%), Postives = 154/202 (76.24%), Query Frame = 1
Query:   88 VFFEERFDDGWESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDHAEKHLVAC-TLIGISSLQNHQGS*GQKPEYWDEK 690
            +F EE F+ GW+S+WV SDWK++E  AG + +TAGKW GDP++KGIQT  D + YAISA+ PEFSNK++TLV Q+SVK EQ ++CGG Y+KLLSG V+QK+FGGDTPYS+MFGPDICG  TKK+H I++Y G N  IKK++ CETD+L H YTFILRPDA+YS+L+D+ E+   +  T   I   +  +    +KPE WD++
Sbjct:   30 IFLEEHFEGGWKSRWVLSDWKRNEGKAGTFKHTAGKWPGDPDNKGIQTYNDAKHYAISAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYVNQKQFGGDTPYSLMFGPDICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFILRPDASYSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDWDDR 231          

HSP 2 Score: 22.7126 bits (47), Expect = 8.169e-66
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  716 EPEGRDSIPRE 748
            +PEG DSIPRE
Sbjct:  241 KPEGFDSIPRE 251          
The following BLAST results are available for this feature:
BLAST of EY720641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CALR_RICCO2.117e-9578.95Calreticulin OS=Ricinus communis PE=2 SV=1[more]
CALR_BETVU6.810e-9477.99Calreticulin OS=Beta vulgaris PE=2 SV=1[more]
CALR_PRUAR1.517e-9376.56Calreticulin OS=Prunus armeniaca PE=2 SV=1[more]
CALR_NICPL4.414e-9380.00Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ... [more]
CALR1_ARATH9.833e-9377.03Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=... [more]
CALR2_ARATH4.880e-9278.54Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=... [more]
CALR_BERST2.422e-9178.16Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]
CALR_ORYSJ1.244e-8771.77Calreticulin OS=Oryza sativa subsp. japonica GN=Os... [more]
CALR_MAIZE2.428e-8369.86Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]
CALR3_ARATH8.169e-6657.43Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-012-D02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720641 ID=EY720641; Name=EY720641; organism=Citrus sinensis; type=EST; length=880bp
CACGCGTCCGCTAAAAATGGCGAAATTAACCCTAGCTCTCTCTCTCTAAC
TCTCCTCATTATCTTCCTGACAATTGCCTCTGCTCACGTCTTCTTCGAAG
AACGCTTTGACGATGGATGGGAAAGCCAGTGGGTTAAATCTGATTGGAAG
AAAGATGAGAACACGGCTGGAGAATGGAACTACACTGCCGGGAAATGGAA
TGGGGACCCGAATGATAAAGGTATTCAAACTAGTGAAGACTACAGGTTCT
ATGCTATTTCAGCTGAATTCCCTGAATTCAGCAACAAGGACAAGACACTC
GTGTTCCAGTTTTCTGTTAAGCATGAACAGAAGCTTGACTGTGGTGGTGG
CTACATGAAGTTGCTTAGTGGCGAAGTTGATCAGAAGAAATTTGGTGGTG
ATACCCCTTACAGTATCATGTTTGGACCAGATATCTGTGGTTATAGCACC
AAGAAAGTGCATGCCATTCTTACCTACAATGGGACAAACAAATTGATCAA
GAAGGAAGTACCATGTGAGACTGACCAACTCACTCATGTGTATACTTTCA
TCCTCCGTCCAGATGCTACTTACAGCATCCTCATTGACCATGCGGAAAAA
CATCTGGTAGCTTGTACTCTGATTGGGATCTCCTCCCTCCAAAACCATCA
AGGATCCTGAGGCCAAAAACCTGAATACTGGGATGAAAAAAATATTTGCC
CGGTCCGTGGGACAGGAACCCGAGGGCCGGGACTCAATCCCCAGGGAAAA
GAGGCTCGCGGATCCGAGAACCCTTCTCGTGGGGGTAGGGACGACCCCTC
TGCGCTCCGCCCCCACCCCCCCCTCCCTCCCCCGCGCCGCCGGCCGTGCG
ATGAGGGGGGAGGGGGGGGGCCGGAGGGGA
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