EY720630

Overview
NameEY720630
Unique NameEY720630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720630_ssr551 microsatellite EY720630_ssr551:551..562. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7921 contig Csv1_Contig7921:1..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY720630 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.105e-35
Identity = 91/189 (48.15%), Postives = 109/189 (57.67%), Query Frame = 2 
Query:  125 MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPAFQEFNQPPQNQSSLPCDPTNQIKNPFQMNEN-LQTNKMQDWDPKAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLICTAGSLLPSMKHTLSAAT-PSMGHLGQS 685
            M+ ++ L    W  SS    E        N  F  F SQQ   KWED SILDY++ + P  QE                       Q N + LQ  + Q WDP+ ML+NLSF+EQKIH+LQDLVHL+VGR  Q+ GR DEL AQQQQLIT DLTSII+QLI TAGSLLPS+KH +S A  P  G  G +
Sbjct:    1 METEDDLCNTNWGSSSSKSREPGSS-DCGNSTFAGFTSQQ---KWEDASILDYEMGVEPGLQE---------------------SIQANVDFLQGVRAQAWDPRTMLSNLSFMEQKIHQLQDLVHLLVGRGGQLQGRQDELAAQQQQLITTDLTSIIIQLISTAGSLLPSVKHNMSTAPGPFTGQPGSA 164
The following BLAST results are available for this feature:
BLAST of EY720630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
STOP1_ARATH1.105e-3548.15Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Ara... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-012-B12-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720630 ID=EY720630; Name=EY720630; organism=Citrus sinensis; type=EST; length=882bp
CACGCGTCCGCGGACGCGTGGGCTGAAATGGAACTGTTAAGTTGAATAGC
AAAGACAGCATCTAAGCTAAGTTGAATCTGATTGATTGGGATTTGGATCT
GGTACCTGAGAAAAGGATTTTGAAATGGATCTTAAAGAGGGACTGCGTGC
AGAGACTTGGGCGAAGTCTTCTTTGGCTGAAAATGAGATGTCAAAAAGGA
TTTCGTCTAATAACCCATGTTTTACCGATTTCAATTCACAGCAATACCAG
CAGAAGTGGGAAGATCCCTCCATCTTAGATTATGACATTAGGATCAATCC
AGCATTTCAAGAATTCAATCAACCTCCTCAAAACCAATCCTCACTCCCTT
GTGACCCCACTAACCAAATTAAAAATCCATTCCAGATGAATGAGAATCTC
CAAACCAACAAAATGCAAGATTGGGATCCAAAAGCAATGCTAAATAATCT
TTCATTTTTGGAACAAAAGATCCATGAGCTTCAGGATTTGGTCCACTTAA
TTGTGGGCCGGAGGAGCCAAATTTTGGGTCGACCAGATGAACTTGTAGCT
CAGCAGCAGCAGCTCATTACTGCAGATCTCACTTCAATTATTGTTCAGTT
AATCTGCACAGCTGGTAGTCTTCTCCCATCCATGAAGCATACCCTCTCTG
CAGCTACTCCTTCCATGGGACACCTTGGGCAATCTGGGCGGGGGTTCCTT
TTCCTCCGCGGGCTGGCTTAAGTGATAGCGTTCAGGTGCAAAATAGTTGT
GCAAACAAAGTTTCTACTCCGTCCAACCCAATGGATCTGGTCGGGACGAA
GTGGGAACGCGCGAAGCCCGGCTGTTCCGCATCGTGATTTATTAAATGAA
TATGATTCTAATACATCAGAACATCTCCCCCC
back to top