EY720623

Overview
NameEY720623
Unique NameEY720623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720623 vs. ExPASy Swiss-Prot
Match: PPF1_PEA (Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 3.707e-42
Identity = 108/261 (41.38%), Postives = 132/261 (50.57%), Query Frame = 1
Query:   67 MTKTLISSPPFVGTXXXXXXXXXXXXXXXXXXNRRLASTRVRLSFQEXXXXXXXXXXXXXNSVFSRTESLLYXXXXXXXXXXXXXXXXXXXXXXXXXQKNGGWFGFISEAMEFVLEILKDGIDAVHVPYSYGFAIILLTVIVKVATCPLTKNRWNQH*QCKTFNLKSKLFNKDMLAIRREYSLRHHFYTGKLGVIQLAGLLATLATIPIWIGL*QALSNGGNEGVVTERFRWDTSMYWANIDCCPKSGWGISWRLRW*EGH 849
            M KTLISSP F+GT                  NR    T+V+ SF +             + +F+R E LLY                         QKNGGWFGFIS+ MEFVL++LKDG+ +VHVPYSYGFAIILLTVIVK AT PLTK +       +    K K   +     +    L       + GV  LAG L TLATIP+WIGL QALSN  NEG++TE F W  S+         +SG GISW   + +GH
Sbjct:    1 MAKTLISSPSFLGTPLPSLHRTFSP-------NRTRLFTKVQFSFHQLPPIQSVSHSVDLSGIFARAEGLLYTLADATVAADAAASTDVAA------QKNGGWFGFISDGMEFVLKVLKDGLSSVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGGPTSIAARQSGSGISWLFPFVDGH 248          
BLAST of EY720623 vs. ExPASy Swiss-Prot
Match: ALB3_ARATH (Inner membrane protein ALBINO3, chloroplastic OS=Arabidopsis thaliana GN=ALB3 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.539e-38
Identity = 97/224 (43.30%), Postives = 117/224 (52.23%), Query Frame = 1
Query:  178 STRVRLSFQEXXXXXXXXXXXXXNSVFSRTESLLYXXXXXXXXXXXXXXXXXXXXXXXXXQKNGGWFGFISEAMEFVLEILKDGIDAVHVPYSYGFAIILLTVIVKVATCPLTKNRWNQH*QCKTFNLKSKLFNKDMLAIRREYSLRHHFYTGKLGVIQLAGLLATLATIPIWIGL*QALSNGGNEGVVTERFRWDTSMYWANIDCCPKSGWGISWRLRW*EGH 849
            ST VR S  E              ++F+R ESLLY                         QK+GGWFGFIS+AME VL+ILKDG+ AVHVPY+YGFAIILLT+IVK AT PLTK +       +    K K   +     +    L       + GV  LAG L TLATIP+WIGL QALSN  NEG+ TE F W  S+         +SG GISW   + +GH
Sbjct:   51 STTVRFSLNEIPPFHGLDSSVDIGAIFTRAESLLYTIADAAVVGADSVVTTDSSAV----QKSGGWFGFISDAMELVLKILKDGLSAVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIAARQSGSGISWLFPFVDGH 270          
BLAST of EY720623 vs. ExPASy Swiss-Prot
Match: ALB31_ARATH (ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 8.016e-29
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = 1
Query:  361 KNGGWFGFISEAMEFVLEILKDGIDAVHVPYSYGFAIILLTVIVKVATCPLTKNRWNQH*QCKTFNLKSKLFNKDMLAIRREYSLRHHFYTGKLGVIQLAGLLATLATIPIWIGL*QALSNGGNEGVVTERFRWDTSMYWANIDCCPKSGWGISWRLRW*EGH 849
            ++  WF  I+  ME +L++LKDG+  VHVPYSYGFAIILLTV+VK AT PLTK +       K+   + K   +     + +  L         G+  LAG L TLATIP+WIGL +ALSN  +EG++TE F W  S+         ++G GISW   + EGH
Sbjct:   92 QSNDWFSGIANYMETILKVLKDGLSTVHVPYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQNGSGISWLFPFIEGH 254          
BLAST of EY720623 vs. ExPASy Swiss-Prot
Match: ALB31_CHLRE (Inner membrane ALBINO3-like protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.267e-22
Identity = 65/161 (40.37%), Postives = 97/161 (60.25%), Query Frame = 1
Query:  358 QKNGGWFGFISEAMEFVLEILKDGIDAVHVPYSYGFAIILLTVIVKVATCPLTKNRWNQH*QCKTFNLKSKL----FNKDMLAIRREYSLRHHFYTGKLGVIQLAGLLATLATIPIWIGL*QALSNGGNEGVV-TERFRWDTSMYWANIDCCPKSGWGISW 825
            Q+ GGW   +++A+E VL  L++G+D +HVPYSYG++IILLT+IVK+ T PLTK +       +    +  L    F +D   I++E S+ +     + GV  LAG L TLATIPI+IGL  +L+N  N+G++ T+ F +  S+         +SG G SW
Sbjct:  108 QRAGGWVAPVADALEQVLYALQEGLDKLHVPYSYGYSIILLTLIVKLLTYPLTKQQVESAMAVQALKPRIDLIKDRFGEDKDKIQKETSVLYE----QAGVNPLAGCLPTLATIPIFIGLFSSLTNVANDGLLDTQGFYFVPSLAGPTTMAMRQSGLGTSW 264          
BLAST of EY720623 vs. ExPASy Swiss-Prot
Match: ALB32_CHLRE (Inner membrane ALBINO3-like protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.521e-19
Identity = 55/136 (40.44%), Postives = 75/136 (55.15%), Query Frame = 1
Query:  367 GGWFGFISEAMEFVLEILKDGIDAVHVPYSYGFAIILLTVIVKVATCPLTKNRWNQH*QCKTFNLKSKLFNKDMLAIRREYSLRHHFYTGKLGVIQLAGLLATLATIPIWIGL*QALSNGGNEGVVTERFRWDTSM 774
            GG    +++  EFVL+ L +G+++  +PYSYGFAII LTV+VKVAT PLT+ +       +    + K              L       + GV  LAG   TLATIP++IGL  ALSN   EG++TE F W  S+
Sbjct:   71 GGPIDVLAQFFEFVLQTLDEGLESAKIPYSYGFAIIALTVLVKVATFPLTQKQVESTLSLQALQPRVKELQAKYADDPENLQLETARLYKEAGVNPLAGCFPTLATIPVFIGLYNALSNAAKEGLLTEGFFWIPSL 206          
The following BLAST results are available for this feature:
BLAST of EY720623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PPF1_PEA3.707e-4241.38Inner membrane protein PPF-1, chloroplastic OS=Pis... [more]
ALB3_ARATH5.539e-3843.30Inner membrane protein ALBINO3, chloroplastic OS=A... [more]
ALB31_ARATH8.016e-2943.56ALBINO3-like protein 1, chloroplastic OS=Arabidops... [more]
ALB31_CHLRE7.267e-2240.37Inner membrane ALBINO3-like protein 1, chloroplast... [more]
ALB32_CHLRE7.521e-1940.44Inner membrane ALBINO3-like protein 2, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-012-B02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720623 ID=EY720623; Name=EY720623; organism=Citrus sinensis; type=EST; length=904bp
CCACGCGTCCGGAGAAGCTGAGCTCAATTCTCATAAAAAAAAAAAAGAAA
AAAAAATTCACCCTCCATGACGAAAACTCTGATTTCATCTCCACCGTTCG
TCGGCACACCACTCCCTTCACCATCATCGTCACTCTCTCGCCACGGGCTC
CACCGGCTTCCTAACCGTAGACTCGCCTCCACCAGAGTTAGACTCAGCTT
CCAAGAAATTCCCCCAATTCTCTCCCTCGACTCTTCTATCGATCTCAACT
CAGTTTTTAGTCGAACTGAGAGCTTGCTTTACACGCTGGCAGACGCTGCC
GTTTCACTTGATTCTGCTTCTGGCGGAGCTGCCTCCACGTCAGCTGATGG
GGCTACGCAGAAAAACGGCGGCTGGTTCGGTTTTATCTCTGAAGCTATGG
AATTCGTTCTCGAGATATTGAAGGATGGGATTGATGCTGTTCATGTGCCG
TATTCATATGGTTTTGCAATAATTTTGTTGACAGTTATTGTTAAAGTTGC
CACATGTCCTTTAACAAAGAACAGGTGGAATCAACATTAGCAATGCAAAA
CCTTCAACCTAAAATCAAAGCTATTCAACAAAGATATGCTGGCAATCAGG
AGAGAATACAGCTTGAGACATCACTTTTATACAGGCAAGCTGGGGGTTAT
CCAATTAGCAGGGTTGTTGGCCACATTGGCTACTATACCAATCTGGATAG
GTCTCTAACAAGCTCTTTCAAATGGTGGCAATGAGGGGGTTGTAACCGAA
AGGTTTCGTTGGGATACCTCGATGTATTGGGCCAATATAGATTGCTGCCC
AAAAAGTGGATGGGGCATTTCCTGGCGCTTACGGTGGTAGGAGGGCCACA
ACCGTTGGGGGGGAAGAAATGGCGGAGTTATGTATTTACATTACTTCTTG
TCCT
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